From 552d1474e7433876f3a9d143fe909c5994509081 Mon Sep 17 00:00:00 2001
From: Michael Perry <lmperry@stanford.edu>
Date: Thu, 15 Mar 2018 13:31:26 -0700
Subject: [PATCH] adjust ownership of downloaded freesurfer assets + add cite
 field to manifest + bump version number

---
 Dockerfile    | 1 +
 manifest.json | 7 ++++---
 2 files changed, 5 insertions(+), 3 deletions(-)

diff --git a/Dockerfile b/Dockerfile
index 75a5280..355c76d 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -31,6 +31,7 @@ RUN wget -N -qO- ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/6.0.0/free
 RUN apt-get install -y libxt-dev libxmu-dev
 ENV FREESURFER_HOME /opt/freesurfer
 RUN wget -N -qO- "http://surfer.nmr.mgh.harvard.edu/fswiki/MatlabRuntime?action=AttachFile&do=get&target=runtime2012bLinux.tar.gz" | tar -xz -C $FREESURFER_HOME
+RUN chown -R root:root $FREESURFER_HOME
 
 # Make directory for flywheel spec (v0)
 ENV FLYWHEEL /flywheel/v0
diff --git a/manifest.json b/manifest.json
index f374cb0..e5a1c84 100644
--- a/manifest.json
+++ b/manifest.json
@@ -6,9 +6,10 @@
   "author": "Laboratory for Computational Neuroimaging <freesurfer@nmr.mgh.harvard.edu>",
   "url": "https://surfer.nmr.mgh.harvard.edu",
   "source": "https://github.com/scitran-apps/freesurfer-recon-all",
-  "license": "GPL-2.0",
+  "cite": "For citation information, please visit: https://surfer.nmr.mgh.harvard.edu/fswiki/FreeSurferMethodsCitation.",
+  "license": "Other",
   "flywheel": "0",
-  "version": "0.1.2",
+  "version": "0.1.3",
   "inputs": {
     "anatomical": {
       "description": "Anatomical NIfTI file or DICOM archive.",
@@ -84,6 +85,6 @@
     }
   },
   "custom": {
-    "docker-image": "scitran/freesurfer-recon-all:v0.1.2"
+    "docker-image": "scitran/freesurfer-recon-all:0.1.3"
   }
 }