diff --git a/demo/DEMO.md b/docs/fibertube/DEMO.md similarity index 100% rename from demo/DEMO.md rename to docs/fibertube/DEMO.md diff --git a/demo/centerlines.trk b/docs/fibertube/centerlines.trk similarity index 100% rename from demo/centerlines.trk rename to docs/fibertube/centerlines.trk diff --git a/demo/centerlines_resampled.trk b/docs/fibertube/centerlines_resampled.trk similarity index 100% rename from demo/centerlines_resampled.trk rename to docs/fibertube/centerlines_resampled.trk diff --git a/demo/diameters.txt b/docs/fibertube/diameters.txt similarity index 100% rename from demo/diameters.txt rename to docs/fibertube/diameters.txt diff --git a/scilpy/image/volume_space_management.py b/scilpy/image/volume_space_management.py index cf54b51bb..cf136b2ab 100644 --- a/scilpy/image/volume_space_management.py +++ b/scilpy/image/volume_space_management.py @@ -3,9 +3,9 @@ from numba_kdtree import KDTree from numba import njit -from scilpy.tracking.fibertube import (streamlines_to_segments, - point_in_cylinder, - sphere_cylinder_intersection) +from scilpy.tracking.fibertube_utils import (streamlines_to_segments, + point_in_cylinder, + sphere_cylinder_intersection) from scilpy.tractograms.streamline_operations import \ get_streamlines_as_fixed_array from dipy.core.interpolation import trilinear_interpolate4d, \ diff --git a/scilpy/tracking/fibertube.py b/scilpy/tracking/fibertube_utils.py similarity index 100% rename from scilpy/tracking/fibertube.py rename to scilpy/tracking/fibertube_utils.py diff --git a/scilpy/tracking/seed.py b/scilpy/tracking/seed.py index c7ea56ac8..0d0c07002 100644 --- a/scilpy/tracking/seed.py +++ b/scilpy/tracking/seed.py @@ -2,7 +2,7 @@ import numpy as np from dipy.io.stateful_tractogram import Space, Origin -from scilpy.tracking.fibertube import sample_cylinder +from scilpy.tracking.fibertube_utils import sample_cylinder class SeedGenerator: diff --git a/scilpy/tractanalysis/fibertube_scoring.py b/scilpy/tractanalysis/fibertube_scoring.py index 2e89c6ab7..9585ffa2f 100644 --- a/scilpy/tractanalysis/fibertube_scoring.py +++ b/scilpy/tractanalysis/fibertube_scoring.py @@ -6,11 +6,11 @@ from numba_kdtree import KDTree as nbKDTree from scipy.spatial import KDTree from scipy.spatial.transform import Rotation -from scilpy.tracking.fibertube import (streamlines_to_segments, - point_in_cylinder, - dist_segment_segment, - dist_point_segment, - sphere_cylinder_intersection) +from scilpy.tracking.fibertube_utils import (streamlines_to_segments, + point_in_cylinder, + dist_segment_segment, + dist_point_segment, + sphere_cylinder_intersection) from scilpy.tracking.utils import tqdm_if_verbose diff --git a/scilpy/tractograms/intersection_finder.py b/scilpy/tractograms/intersection_finder.py index 336029cb6..9d1b0cdfb 100644 --- a/scilpy/tractograms/intersection_finder.py +++ b/scilpy/tractograms/intersection_finder.py @@ -4,8 +4,8 @@ import numpy as np from scipy.spatial import KDTree -from scilpy.tracking.fibertube import (streamlines_to_segments, - dist_segment_segment) +from scilpy.tracking.fibertube_utils import (streamlines_to_segments, + dist_segment_segment) from dipy.io.stateful_tractogram import StatefulTractogram from scilpy.tracking.utils import tqdm_if_verbose diff --git a/scripts/scil_ft_reconstruction_metrics.py b/scripts/scil_fibertube_score_tractogram.py similarity index 100% rename from scripts/scil_ft_reconstruction_metrics.py rename to scripts/scil_fibertube_score_tractogram.py diff --git a/scripts/scil_ft_tracking.py b/scripts/scil_fibertube_tracking.py similarity index 100% rename from scripts/scil_ft_tracking.py rename to scripts/scil_fibertube_tracking.py diff --git a/scripts/scil_ft_visualize_collisions.py b/scripts/scil_viz_tractogram_collisions.py similarity index 100% rename from scripts/scil_ft_visualize_collisions.py rename to scripts/scil_viz_tractogram_collisions.py