From d0a72fca49d9eb8e38445c42beaecb6bac33558f Mon Sep 17 00:00:00 2001 From: Philippe Karan Date: Wed, 31 Jul 2024 09:35:54 -0400 Subject: [PATCH] Removing unused argument in parser --- scripts/scil_bundle_fixel_analysis.py | 13 ++++++------- 1 file changed, 6 insertions(+), 7 deletions(-) diff --git a/scripts/scil_bundle_fixel_analysis.py b/scripts/scil_bundle_fixel_analysis.py index 68e69ec41..34c75aff7 100644 --- a/scripts/scil_bundle_fixel_analysis.py +++ b/scripts/scil_bundle_fixel_analysis.py @@ -149,12 +149,14 @@ def _build_arg_parser(): g2 = p.add_argument_group(title='Output options') g2.add_argument('--split_bundles', action='store_true', - help='If set, save the density maps for each bundle ' - 'separately \nin addition to the all in one version.') + help='If set, save the density maps and masks for each ' + 'bundle separately \nin addition to the all in one ' + 'version.') g2.add_argument('--split_fixels', action='store_true', - help='If set, save the density maps for each fixel ' - 'separately \nin addition to the all in one version.') + help='If set, save the density maps and masks for each ' + 'fixel separately \nin addition to the all in one ' + 'version.') g2.add_argument('--single_bundle', action='store_true', help='If set, will save the single-fiber single-bundle ' @@ -162,9 +164,6 @@ def _build_arg_parser(): 'selecting the voxels where only one bundle is ' 'present \n(and one fiber/fixel).') - g2.add_argument('--bundles_mask', action='store_true', - help='If set, save the bundle mask for each bundle.') - g2.add_argument('--out_dir', default="fixel_analysis/", help='Path to the output directory where all the output ' 'files will be saved. \nCurrent directory by '