From cc76f2c77932f9832ae124be85e679b55605bc1f Mon Sep 17 00:00:00 2001
From: Alex Valcourt Caron <alex.valcourt.caron@usherbrooke.ca>
Date: Tue, 14 Nov 2023 18:35:56 +0000
Subject: [PATCH] stop tracking .test_data

---
 .dvc/.gitignore                              | 3 +++
 .dvc/config                                  | 0
 .dvcignore                                   | 3 +++
 .test_data/betcrop/cropvolume_image.nii.gz   | 3 ---
 .test_data/betcrop/cropvolume_mask.nii.gz    | 3 ---
 .test_data/betcrop/fslbetcrop_bval.bval      | 3 ---
 .test_data/betcrop/fslbetcrop_bvec.bvec      | 3 ---
 .test_data/denoising/nlmeans_image.nii.gz    | 3 ---
 .test_data/denoising/nlmeans_mask.nii.gz     | 3 ---
 .test_data/heavy/dwi/dwi.nii.gz              | 3 ---
 .test_data/preproc/b0.nii.gz                 | 3 ---
 .test_data/preproc/b0_mask.nii.gz            | 3 ---
 .test_data/preproc/dwi.nii.gz                | 3 ---
 .test_data/preproc/dwi_normalize.nii.gz      | 3 ---
 .test_data/preproc/dwi_normalize_bval.bval   | 3 ---
 .test_data/preproc/dwi_normalize_bvec.bvec   | 3 ---
 .test_data/preproc/dwi_normalize_mask.nii.gz | 3 ---
 17 files changed, 6 insertions(+), 42 deletions(-)
 create mode 100644 .dvc/.gitignore
 create mode 100644 .dvc/config
 create mode 100644 .dvcignore
 delete mode 100644 .test_data/betcrop/cropvolume_image.nii.gz
 delete mode 100644 .test_data/betcrop/cropvolume_mask.nii.gz
 delete mode 100644 .test_data/betcrop/fslbetcrop_bval.bval
 delete mode 100644 .test_data/betcrop/fslbetcrop_bvec.bvec
 delete mode 100755 .test_data/denoising/nlmeans_image.nii.gz
 delete mode 100644 .test_data/denoising/nlmeans_mask.nii.gz
 delete mode 100644 .test_data/heavy/dwi/dwi.nii.gz
 delete mode 100644 .test_data/preproc/b0.nii.gz
 delete mode 100644 .test_data/preproc/b0_mask.nii.gz
 delete mode 100644 .test_data/preproc/dwi.nii.gz
 delete mode 100644 .test_data/preproc/dwi_normalize.nii.gz
 delete mode 100644 .test_data/preproc/dwi_normalize_bval.bval
 delete mode 100644 .test_data/preproc/dwi_normalize_bvec.bvec
 delete mode 100644 .test_data/preproc/dwi_normalize_mask.nii.gz

diff --git a/.dvc/.gitignore b/.dvc/.gitignore
new file mode 100644
index 00000000..528f30c7
--- /dev/null
+++ b/.dvc/.gitignore
@@ -0,0 +1,3 @@
+/config.local
+/tmp
+/cache
diff --git a/.dvc/config b/.dvc/config
new file mode 100644
index 00000000..e69de29b
diff --git a/.dvcignore b/.dvcignore
new file mode 100644
index 00000000..51973055
--- /dev/null
+++ b/.dvcignore
@@ -0,0 +1,3 @@
+# Add patterns of files dvc should ignore, which could improve
+# the performance. Learn more at
+# https://dvc.org/doc/user-guide/dvcignore
diff --git a/.test_data/betcrop/cropvolume_image.nii.gz b/.test_data/betcrop/cropvolume_image.nii.gz
deleted file mode 100644
index e4955759..00000000
--- a/.test_data/betcrop/cropvolume_image.nii.gz
+++ /dev/null
@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:a3142e73075e193bfa45f07539502097cca1d58c68cc8b78f96db4ed1a0d3726
-size 88
diff --git a/.test_data/betcrop/cropvolume_mask.nii.gz b/.test_data/betcrop/cropvolume_mask.nii.gz
deleted file mode 100644
index 4fedac72..00000000
--- a/.test_data/betcrop/cropvolume_mask.nii.gz
+++ /dev/null
@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:a5e0db92ace8b0df83f7a50c724428517c3954c2a2c0905b6e88c847f2291461
-size 86
diff --git a/.test_data/betcrop/fslbetcrop_bval.bval b/.test_data/betcrop/fslbetcrop_bval.bval
deleted file mode 100644
index 6ca186ce..00000000
--- a/.test_data/betcrop/fslbetcrop_bval.bval
+++ /dev/null
@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:313d104061eeb93961146fcaa5ce5ba088e4ada652787990624bf96ad452db95
-size 1600
diff --git a/.test_data/betcrop/fslbetcrop_bvec.bvec b/.test_data/betcrop/fslbetcrop_bvec.bvec
deleted file mode 100644
index 64868a94..00000000
--- a/.test_data/betcrop/fslbetcrop_bvec.bvec
+++ /dev/null
@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:f54f2c4a161227e840a06a5bd39baad2977c3be6fe0804daa3fbd6b03d3e0d64
-size 4893
diff --git a/.test_data/denoising/nlmeans_image.nii.gz b/.test_data/denoising/nlmeans_image.nii.gz
deleted file mode 100755
index 6ab3d05c..00000000
--- a/.test_data/denoising/nlmeans_image.nii.gz
+++ /dev/null
@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:e5a6ed70508568b70088fdec6a9dae5d03b72907ee3132e186e944805481d908
-size 15490739
diff --git a/.test_data/denoising/nlmeans_mask.nii.gz b/.test_data/denoising/nlmeans_mask.nii.gz
deleted file mode 100644
index a9c1a35e..00000000
--- a/.test_data/denoising/nlmeans_mask.nii.gz
+++ /dev/null
@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:dcec61d61985a4d2930235e0114d0b2ab8f45ef025902cfeb346ee63ae2fdc22
-size 91555
diff --git a/.test_data/heavy/dwi/dwi.nii.gz b/.test_data/heavy/dwi/dwi.nii.gz
deleted file mode 100644
index 66ebf4f8..00000000
--- a/.test_data/heavy/dwi/dwi.nii.gz
+++ /dev/null
@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:ff9205f57ccac7ff604df86ea474f4f66177293916888343f49e35e0ff81384e
-size 25156535
diff --git a/.test_data/preproc/b0.nii.gz b/.test_data/preproc/b0.nii.gz
deleted file mode 100644
index 6a0a4add..00000000
--- a/.test_data/preproc/b0.nii.gz
+++ /dev/null
@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
-oid sha256:a0aed51cc14c0f9c970c9be769db881aefe1f303dcef2a021b7abd4c4eaf5664
-size 384991
diff --git a/.test_data/preproc/b0_mask.nii.gz b/.test_data/preproc/b0_mask.nii.gz
deleted file mode 100644
index 85f42aa1..00000000
--- a/.test_data/preproc/b0_mask.nii.gz
+++ /dev/null
@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
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-size 6222
diff --git a/.test_data/preproc/dwi.nii.gz b/.test_data/preproc/dwi.nii.gz
deleted file mode 100644
index a2ceae40..00000000
--- a/.test_data/preproc/dwi.nii.gz
+++ /dev/null
@@ -1,3 +0,0 @@
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-size 8177502
diff --git a/.test_data/preproc/dwi_normalize.nii.gz b/.test_data/preproc/dwi_normalize.nii.gz
deleted file mode 100644
index 38ffa44e..00000000
--- a/.test_data/preproc/dwi_normalize.nii.gz
+++ /dev/null
@@ -1,3 +0,0 @@
-version https://git-lfs.github.com/spec/v1
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-size 72960896
diff --git a/.test_data/preproc/dwi_normalize_bval.bval b/.test_data/preproc/dwi_normalize_bval.bval
deleted file mode 100644
index dfbe1d61..00000000
--- a/.test_data/preproc/dwi_normalize_bval.bval
+++ /dev/null
@@ -1,3 +0,0 @@
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diff --git a/.test_data/preproc/dwi_normalize_bvec.bvec b/.test_data/preproc/dwi_normalize_bvec.bvec
deleted file mode 100644
index c6fbc492..00000000
--- a/.test_data/preproc/dwi_normalize_bvec.bvec
+++ /dev/null
@@ -1,3 +0,0 @@
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diff --git a/.test_data/preproc/dwi_normalize_mask.nii.gz b/.test_data/preproc/dwi_normalize_mask.nii.gz
deleted file mode 100644
index 91e2bd63..00000000
--- a/.test_data/preproc/dwi_normalize_mask.nii.gz
+++ /dev/null
@@ -1,3 +0,0 @@
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