The format is based on Keep a Changelog and this project adheres to Semantic Versioning.
- Required --dti_shells and --fodf_shells parameters.
- Fastsurfer and freesurfer outputs are now in their own dedicated output folder.
- Update minimal
nextflow
version to 24.10.0. - Add subject and global-level QC using the MultiQC module.
- If
-profile freesurfer
is used, do not run T1 preprocessing. - Optional DWI preprocessing using parameters.
- New docker containers for fastsurfer, atlases, and QC.
- Transform computation in
segmentation/fastsurfer
.
- Complete test suites for the pipeline using stub-runs.
- Complete port of Infant-DWI modules and workflows into the nf-core template.