A error in LoadVizgen: unused argument (type = c("centroids")) when using LoadVizgen

[zysmu]

No description provided.

[zysmu]

vizgen.obj_test1<-LoadVizgen(data.dir, fov = "s2r1", assay = "Vizgen",type = c("centroids"), z = 3L)
Error in LoadVizgen(data.dir, fov = "s2r1", assay = "Vizgen", type = c("centroids"), :
unused argument (type = c("centroids"))

Seurat is 5.1.0

[alikhuseynov]

the type = c("centroids") argument is for ReadVizgen
check this threads, in that PR you can use type within LoadVizgen

• Support to handle .parquet output from Vizgen #7190
• Processing vizgen data #7080 (comment)

[longmanz]

Hi,
As suggested by alikhuseynov (many thanks for helping out), type is only supported by ReadVizgen() at the moment. You may use the LoadVizgen from alikhuseynov's PR as a workaround.