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Sorry I have a naive question and can't find a similar issue. I would like to run FindAllMarkers (or similar) on an Azimuth reference to get marker genes for each annotation.
The Azimuth ref contains the $map and $plot Seurat objects. Which one should I use? Any pre-process required?
I couldn't make it run so far.
Thank you in advance!
The text was updated successfully, but these errors were encountered:
Dear Azimuth team,
Sorry I have a naive question and can't find a similar issue. I would like to run
FindAllMarkers(or similar) on an Azimuth reference to get marker genes for each annotation.The Azimuth ref contains the
$mapand$plotSeurat objects. Which one should I use? Any pre-process required?I couldn't make it run so far.
Thank you in advance!
The text was updated successfully, but these errors were encountered: