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LZ.2/XDV.1 recombinant with LZ.2 acquiring Orf9b/N from XDV in Singapore (3) #2093

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FedeGueli opened this issue Sep 26, 2024 · 2 comments
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LZ.2/XDV.1 recombinant with LZ.2 acquiring Orf9b/N from XDV in Singapore (3) #2093

FedeGueli opened this issue Sep 26, 2024 · 2 comments
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Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. FLiRT FLiRT is an Acronym for S:R346T + S:F456L ORF9b recombinant S:59

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@FedeGueli
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FedeGueli commented Sep 26, 2024 •
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LZ.2/XDV.1 with LZ.2 acquiring Orf9b/N from XDV.1
BP before 28297
LZ.2 loses C28958A (N:Q229K) and acquires T28297C (Orf9b:I5T)
Private mutations: Orf1a:A3392V (C10440T)

Query: C10440T, T28297C,T2032C
Samples: 3 all from Singapore
Screenshot 2024-09-26 alle 11 01 40
https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_d4de_521ff0.json?label=id:node_7138446

Originally posted by @FedeGueli in #2086 (comment)
@FedeGueli FedeGueli changed the title LZ.2/XDV.1 with LZ.2 acquiring Orf9b/N from XDV in Singpaore (3) LZ.2/XDV.1 recombinant with LZ.2 acquiring Orf9b/N from XDV in Singpaore (3) Sep 26, 2024
@FedeGueli FedeGueli added recombinant ORF9b S:59 FLiRT FLiRT is an Acronym for S:R346T + S:F456L labels Sep 26, 2024
@FedeGueli FedeGueli mentioned this issue Sep 26, 2024
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@FedeGueli FedeGueli added the Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. label Sep 30, 2024
@FedeGueli
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If not present in the next Singapore batch i will close this

@FedeGueli
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Absent from the last batch

@FedeGueli FedeGueli closed this as not planned Won't fix, can't repro, duplicate, stale Oct 10, 2024
@FedeGueli FedeGueli changed the title LZ.2/XDV.1 recombinant with LZ.2 acquiring Orf9b/N from XDV in Singpaore (3) LZ.2/XDV.1 recombinant with LZ.2 acquiring Orf9b/N from XDV in Singapore (3) Oct 10, 2024
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Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. FLiRT FLiRT is an Acronym for S:R346T + S:F456L ORF9b recombinant S:59
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