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LZ.2.1+S:478E(12 seqs, 6 places) #2092

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xz-keg opened this issue Sep 26, 2024 · 7 comments
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LZ.2.1+S:478E(12 seqs, 6 places) #2092

xz-keg opened this issue Sep 26, 2024 · 7 comments
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Convergent evolution Lineages with convergent mutations Emerged in an undersampled area Actual infection toll may be much larger than number of sequences suggest LZ.2 S:59 S:111 S:346 S:456 S:478
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LZ.2.1.1

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@xz-keg
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xz-keg commented Sep 26, 2024

LZ.2.1+A22994G(S:K478E)

GISAID query: A22994G,C29642T,T21738C
No. of seqs: 8(China 5(Hubei-Jingzhou) USA 2(GBW from Hong Kong) Singapore 1)

First: EPI_ISL_19299466, Hubei-Jingzhou, 2024-7-23
Latest: EPI_ISL_19440124,Hubei-Jingzhou, 2024-9-9

usher
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@FedeGueli
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it is the one highlighted in #1909 (comment)
ahah i just stopped to track it yesterday and now a new seq popped up, as usual.
Thx for proposing

@FedeGueli FedeGueli mentioned this issue Sep 26, 2024
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@xz-keg
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xz-keg commented Oct 1, 2024

+1 Hubei-Yichang with additional S:D111N

@xz-keg xz-keg changed the title LZ.2.1+S:478E(8 seqs, 3 places) LZ.2.1+S:478E(9 seqs, 4 places) Oct 1, 2024
@FedeGueli FedeGueli added Convergent evolution Lineages with convergent mutations S:111 labels Oct 1, 2024
@DailyCovidCases
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Likely dying off now

@FedeGueli
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we need to wait next chinese batches.

@FedeGueli FedeGueli added Emerged in an undersampled area Actual infection toll may be much larger than number of sequences suggest Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. labels Oct 14, 2024
@xz-keg
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xz-keg commented Oct 16, 2024

+1 Yichang +1 Xiangyang

@xz-keg xz-keg changed the title LZ.2.1+S:478E(9 seqs, 4 places) LZ.2.1+S:478E(11 seqs, 6 places) Oct 16, 2024
@FedeGueli
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Likely dying off now

as expected it is not.

@FedeGueli FedeGueli removed the Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. label Oct 16, 2024
@xz-keg
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xz-keg commented Oct 27, 2024 •
edited by FedeGueli
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designated LZ.2.1.1 via cov-lineages/pango-designation@73becf7

@xz-keg xz-keg closed this as completed Oct 27, 2024
@xz-keg xz-keg added this to the LZ.2.1.1 milestone Oct 27, 2024
FedeGueli referenced this issue in cov-lineages/pango-designation Oct 27, 2024
@corneliusroemer
Designate KR.1.4, LZ.2.1.1/2
73becf7
@FedeGueli FedeGueli changed the title LZ.2.1+S:478E(11 seqs, 6 places) LZ.2.1+S:478E(12 seqs, 6 places) Oct 27, 2024
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Convergent evolution Lineages with convergent mutations Emerged in an undersampled area Actual infection toll may be much larger than number of sequences suggest LZ.2 S:59 S:111 S:346 S:456 S:478
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@xz-keg @FedeGueli @DailyCovidCases