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XDV.1+Orf1a:Q1292R,S:T572I+S:478Q (18 seqs, 9 places) #2090

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xz-keg opened this issue Sep 26, 2024 · 4 comments
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XDV.1+Orf1a:Q1292R,S:T572I+S:478Q (18 seqs, 9 places) #2090

xz-keg opened this issue Sep 26, 2024 · 4 comments
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2nuc mutation Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. S:456 S:478 S:572 XDV

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@xz-keg
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xz-keg commented Sep 26, 2024 •
edited by FedeGueli
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XDV.1+T13602C+C7564T+A4140G,C23277T(Orf1a:Q1292R,S:T572I)+G20679T,A22994C(S:K478Q)

S:T572I and S:K478Q seems to be a combo pair that appears in multiple branches.

GISAID query: A22994C,A4140G,C23277T
No. of seqs: 7(China 3(Jilin-Changchun, Hong Kong), Australia 2(SA, QLD), USA 1 Canada 1)

First: EPI_ISL_19361578, Jilin, 2024-8-6
Latest: EPI_ISL_19437430, Hong Kong, 2024-9-16

usher updated on Oct 13
Screenshot 2024-10-13 alle 13 23 45
@xz-keg xz-keg removed the ORF9b label Sep 26, 2024
@FedeGueli FedeGueli changed the title XDV.1+Orf1a:Q1292R,S:T572I+S:478Q (7 seqs, 6 places) XDV.1+Orf1a:Q1292R,S:T572I+S:478Q (8 seqs, 7 places) Oct 1, 2024
@FedeGueli
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8 Liaoning recent

@xz-keg xz-keg changed the title XDV.1+Orf1a:Q1292R,S:T572I+S:478Q (8 seqs, 7 places) XDV.1+Orf1a:Q1292R,S:T572I+S:478Q (9 seqs, 7 places) Oct 9, 2024
@xz-keg
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xz-keg commented Oct 9, 2024

+1 Australia-SA

@FedeGueli FedeGueli changed the title XDV.1+Orf1a:Q1292R,S:T572I+S:478Q (9 seqs, 7 places) XDV.1+Orf1a:Q1292R,S:T572I+S:478Q (17 seqs, 7 places) Oct 13, 2024
@FedeGueli
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FedeGueli commented Oct 13, 2024 •
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Big upload from Heilongjiang brings it at 17

i ve updated the tree on the main proposal, it is now evident a new sub branch with S:T547K

@xz-keg xz-keg changed the title XDV.1+Orf1a:Q1292R,S:T572I+S:478Q (17 seqs, 7 places) XDV.1+Orf1a:Q1292R,S:T572I+S:478Q (17 seqs, 8 places) Oct 13, 2024
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xz-keg commented Oct 27, 2024

+1 Russia

@xz-keg xz-keg changed the title XDV.1+Orf1a:Q1292R,S:T572I+S:478Q (17 seqs, 8 places) XDV.1+Orf1a:Q1292R,S:T572I+S:478Q (18 seqs, 9 places) Oct 27, 2024
@FedeGueli FedeGueli added Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. and removed Rapid review needed labels Nov 4, 2024
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2nuc mutation Apparently slow It means that a lineage is accumulating sequences slowly not that it is intrinsically slow. S:456 S:478 S:572 XDV
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