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XEC+Orf1a:A599T+S:T572I (18 seqs, 10 places) #2087

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xz-keg opened this issue Sep 25, 2024 · 9 comments
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XEC+Orf1a:A599T+S:T572I (18 seqs, 10 places) #2087

xz-keg opened this issue Sep 25, 2024 · 9 comments
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S:572 To be proposed Green light for proposal XEC
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XEC.4

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@xz-keg
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xz-keg commented Sep 25, 2024 •
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XEC+G2060A(Orf1a:A599T)+C23277T(S:T572I)

GISAID query: G2060A, C23277T,C18657T,-14106,-G2272A,-24034 (may include more -s as convergent going on)
No. of seqs: 7(Australia 4(SA,QLD), Netherlands 1 Sweden 1 UK 1)

First: EPI_ISL_19406429, England, 2024-8-29
Latest: EPI_ISL_19434336,Australia-SA, 2024-9-14

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@xz-keg xz-keg mentioned this issue Sep 25, 2024
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@FedeGueli FedeGueli changed the title XEC+Orf1a:A599T+S:T572I (7 seqs, 5 places) XEC+Orf1a:A599T+S:T572I (9 seqs, 6 places) Sep 27, 2024
@FedeGueli
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+2 France

@FedeGueli FedeGueli changed the title XEC+Orf1a:A599T+S:T572I (9 seqs, 6 places) XEC+Orf1a:A599T+S:T572I (11 seqs, 7 places) Oct 1, 2024
@FedeGueli
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11, Italy

@xz-keg
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xz-keg commented Oct 2, 2024

Remove 2 French seqs due to convergence on other branch.

@xz-keg xz-keg changed the title XEC+Orf1a:A599T+S:T572I (11 seqs, 7 places) XEC+Orf1a:A599T+S:T572I (9 seqs, 6 places) Oct 2, 2024
@FedeGueli
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Remove 2 French seqs due to convergence on other branch.

thx

@FedeGueli FedeGueli changed the title XEC+Orf1a:A599T+S:T572I (9 seqs, 6 places) XEC+Orf1a:A599T+S:T572I (10 seqs, 7 places) Oct 3, 2024
@FedeGueli
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10 Spain

@FedeGueli FedeGueli changed the title XEC+Orf1a:A599T+S:T572I (10 seqs, 7 places) XEC+Orf1a:A599T+S:T572I (11 seqs, 7 places) Oct 5, 2024
@xz-keg xz-keg changed the title XEC+Orf1a:A599T+S:T572I (11 seqs, 7 places) XEC+Orf1a:A599T+S:T572I (10 seqs, 6 places) Oct 6, 2024
@xz-keg
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xz-keg commented Oct 9, 2024

16, also in NSW and Sweden

@xz-keg xz-keg changed the title XEC+Orf1a:A599T+S:T572I (10 seqs, 6 places) XEC+Orf1a:A599T+S:T572I (16 seqs, 8 places) Oct 9, 2024
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xz-keg commented Oct 12, 2024

+1 QLD
+2 GBW from New Zealand

@xz-keg xz-keg changed the title XEC+Orf1a:A599T+S:T572I (16 seqs, 8 places) XEC+Orf1a:A599T+S:T572I (19 seqs, 10 places) Oct 12, 2024
@FedeGueli FedeGueli added To be proposed Green light for proposal and removed Rapid review needed labels Oct 12, 2024
@FedeGueli
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Pls propose it

@xz-keg xz-keg changed the title XEC+Orf1a:A599T+S:T572I (19 seqs, 10 places) XEC+Orf1a:A599T+S:T572I (18 seqs, 10 places) Oct 12, 2024
@xz-keg xz-keg mentioned this issue Oct 12, 2024
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@xz-keg xz-keg closed this as completed Oct 12, 2024
@xz-keg xz-keg added this to the XEC.4 milestone Nov 1, 2024
@FedeGueli
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XEC.4 from cov-lineages/pango-designation@b1e238c#diff-ead4244ff49c81bc758e9f068f5ef42156bd985b9c86de8fa4d6fcd7f2829090R1206

FedeGueli referenced this issue in cov-lineages/pango-designation Nov 1, 2024
@corneliusroemer
Designate a bunch of lineages
b1e238c
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