Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

NEW KP.3.2.3 (Orf3a:S40P) with S:31del mini saltation lineage in Iowa, US (4) #2066

Closed
FedeGueli opened this issue Sep 20, 2024 · 2 comments
Closed

NEW KP.3.2.3 (Orf3a:S40P) with S:31del mini saltation lineage in Iowa, US (4) #2066

FedeGueli opened this issue Sep 20, 2024 · 2 comments
Labels
DeFLiRT S:S31/F32-+S:R346T+S:F456L DeFLuQE S:S31-+S:F456L+S:Q493E Mini Saltation N Glycan

Comments

@FedeGueli
Copy link

FedeGueli commented Sep 20, 2024 •
edited
Loading

There is a Defluqe/Deflirt Kp.3.2.3 mini saltation with 8 AA Muts/Dels

Defining mutations:
KP.3.2.3 >> T11795C > Orf1a:G112S (G599A), Orf1a:G519S (G1820A), Orf1a:P1213S (C3902T), Orf1a: N4293S (A13143G), C19017T, del21653-55 (S:S31del) , S:R346T (G22599C), S:Q474Q (G22984A), Orf3a:D155Y (G25855T), N:Q294K (C29153A)
Query: T11795C,G25855T,A13143G
Samples: 3
Iowa
First collected on 2024-08-18
Tree:
Screenshot 2024-09-20 alle 11 10 49
https://nextstrain.org/fetch/genome-test.gi.ucsc.edu/trash/ct/subtreeAuspice1_genome_test_63fae_d37dc0.json?c=userOrOld&label=id:node_7075481
@FedeGueli FedeGueli added DeFLuQE S:S31-+S:F456L+S:Q493E Mini Saltation DeFLiRT S:S31/F32-+S:R346T+S:F456L N Glycan labels Sep 20, 2024
@FedeGueli
Copy link
Author

no new seqs closing it for now

@FedeGueli FedeGueli closed this as not planned Won't fix, can't repro, duplicate, stale Sep 30, 2024
@FedeGueli FedeGueli changed the title NEW KP.3.2.3 (Orf3a:S40P) with S:31del mini saltation lineage in Iowa, US (3) NEW KP.3.2.3 (Orf3a:S40P) with S:31del mini saltation lineage in Iowa, US (4) Oct 15, 2024
@FedeGueli
Copy link
Author

+1 Illinois

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
DeFLiRT S:S31/F32-+S:R346T+S:F456L DeFLuQE S:S31-+S:F456L+S:Q493E Mini Saltation N Glycan
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@FedeGueli