You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Hi, i am trying to run mlst_check and i am getting this error . could you please help me out?
*get_sequence_type -s "Pseudomonas aeruginosa" .fna
Can't locate Bio/Perl.pm in @inc (you may need to install the Bio::Perl module) (@inc contains: /software/pathogen/internal/prod/lib ./lib ../lib /home/bvs/perl5/lib/perl5/x86_64-linux-thread-multi /home/bvs/perl5/lib/perl5 /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/x86_64-linux-thread-multi /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2 /home/bvs/anaconda3/envs/myenv/lib/5.26.2/x86_64-linux-thread-multi /home/bvs/anaconda3/envs/myenv/lib/5.26.2 .) at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/CompareAlleles.pm line 9.
BEGIN failed--compilation aborted at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/CompareAlleles.pm line 9.
Compilation failed in require at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/ProcessFasta.pm line 8.
BEGIN failed--compilation aborted at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/ProcessFasta.pm line 8.
Compilation failed in require at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/Check.pm line 7.
BEGIN failed--compilation aborted at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/Check.pm line 7.
Compilation failed in require at /home/bvs/anaconda3/envs/myenv/bin/get_sequence_type line 14.
BEGIN failed--compilation aborted at /home/bvs/anaconda3/envs/myenv/bin/get_sequence_type line 14.
Thank you
The text was updated successfully, but these errors were encountered:
Hi, i am trying to run mlst_check and i am getting this error . could you please help me out?
*get_sequence_type -s "Pseudomonas aeruginosa" .fna
Can't locate Bio/Perl.pm in @inc (you may need to install the Bio::Perl module) (@inc contains: /software/pathogen/internal/prod/lib ./lib ../lib /home/bvs/perl5/lib/perl5/x86_64-linux-thread-multi /home/bvs/perl5/lib/perl5 /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/x86_64-linux-thread-multi /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2 /home/bvs/anaconda3/envs/myenv/lib/5.26.2/x86_64-linux-thread-multi /home/bvs/anaconda3/envs/myenv/lib/5.26.2 .) at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/CompareAlleles.pm line 9.
BEGIN failed--compilation aborted at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/CompareAlleles.pm line 9.
Compilation failed in require at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/ProcessFasta.pm line 8.
BEGIN failed--compilation aborted at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/ProcessFasta.pm line 8.
Compilation failed in require at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/Check.pm line 7.
BEGIN failed--compilation aborted at /home/bvs/anaconda3/envs/myenv/lib/site_perl/5.26.2/Bio/MLST/Check.pm line 7.
Compilation failed in require at /home/bvs/anaconda3/envs/myenv/bin/get_sequence_type line 14.
BEGIN failed--compilation aborted at /home/bvs/anaconda3/envs/myenv/bin/get_sequence_type line 14.
Thank you
The text was updated successfully, but these errors were encountered: