You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I love Artemis and I need to to work!
Please advice me to fix this error.
I have installed artemis both via terminal and also by downloading the dmg.
I've tried JDK 19 and JDK 21 (the latest version).
It runs but when trying to use Edit -> subsequence (and features) it freezes and nothing happens. I suspect it has something to do with Java. Otherwise it seems as if artemis is working fine.
This is whats prompted in the terminal:
art
Starting Artemis with arguments: -mx2g -ms100m -noverify --add-opens=java.base/java.lang=ALL-UNNAMED --add-opens=java.base/java.util=ALL-UNNAMED -Djdbc.drivers=org.postgresql.Driver -Dartemis.environment=UNIX -Dapple.laf.useScreenMenuBar=true -Xdock:name=Artemis
Warning: the fonts "Times" and "Times" are not available for the Java logical font "Serif", which may have unexpected appearance or behavior. Re-enable the "Times" font to remove this warning.
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at uk.ac.sanger.artemis.Entry.add(Entry.java:589)
at uk.ac.sanger.artemis.Entry.add(Entry.java:536)
at uk.ac.sanger.artemis.Entry.truncate(Entry.java:880)
at uk.ac.sanger.artemis.SimpleEntryGroup.truncate(SimpleEntryGroup.java:1031)
at uk.ac.sanger.artemis.components.EditMenu.editSubSequence(EditMenu.java:1083)
at uk.ac.sanger.artemis.components.EditMenu.access$400(EditMenu.java:70)
at uk.ac.sanger.artemis.components.EditMenu$5.actionPerformed(EditMenu.java:351)
at java.desktop/javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1967)
at java.desktop/javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2308)
at java.desktop/javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:405)
at java.desktop/javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:262)
at java.desktop/javax.swing.AbstractButton.doClick(AbstractButton.java:369)
at java.desktop/javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:1020)
at java.desktop/com.apple.laf.AquaMenuItemUI.doClick(AquaMenuItemUI.java:157)
at java.desktop/javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:1064)
at java.desktop/java.awt.Component.processMouseEvent(Component.java:6635)
at java.desktop/javax.swing.JComponent.processMouseEvent(JComponent.java:3342)
at java.desktop/java.awt.Component.processEvent(Component.java:6400)
at java.desktop/java.awt.Container.processEvent(Container.java:2263)
at java.desktop/java.awt.Component.dispatchEventImpl(Component.java:5011)
at java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2321)
at java.desktop/java.awt.Component.dispatchEvent(Component.java:4843)
at java.desktop/java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4918)
at java.desktop/java.awt.LightweightDispatcher.processMouseEvent(Container.java:4547)
at java.desktop/java.awt.LightweightDispatcher.dispatchEvent(Container.java:4488)
at java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2307)
at java.desktop/java.awt.Window.dispatchEventImpl(Window.java:2772)
at java.desktop/java.awt.Component.dispatchEvent(Component.java:4843)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:772)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:95)
at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:745)
at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:743)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:742)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
Thank you in advance!
The text was updated successfully, but these errors were encountered:
Hi,
I love Artemis and I need to to work!
Please advice me to fix this error.
I have installed artemis both via terminal and also by downloading the dmg.
I've tried JDK 19 and JDK 21 (the latest version).
It runs but when trying to use Edit -> subsequence (and features) it freezes and nothing happens. I suspect it has something to do with Java. Otherwise it seems as if artemis is working fine.
This is whats prompted in the terminal:
art
Starting Artemis with arguments: -mx2g -ms100m -noverify --add-opens=java.base/java.lang=ALL-UNNAMED --add-opens=java.base/java.util=ALL-UNNAMED -Djdbc.drivers=org.postgresql.Driver -Dartemis.environment=UNIX -Dapple.laf.useScreenMenuBar=true -Xdock:name=Artemis
Warning: the fonts "Times" and "Times" are not available for the Java logical font "Serif", which may have unexpected appearance or behavior. Re-enable the "Times" font to remove this warning.
Exception in thread "AWT-EventQueue-0" java.lang.NullPointerException
at uk.ac.sanger.artemis.Entry.add(Entry.java:589)
at uk.ac.sanger.artemis.Entry.add(Entry.java:536)
at uk.ac.sanger.artemis.Entry.truncate(Entry.java:880)
at uk.ac.sanger.artemis.SimpleEntryGroup.truncate(SimpleEntryGroup.java:1031)
at uk.ac.sanger.artemis.components.EditMenu.editSubSequence(EditMenu.java:1083)
at uk.ac.sanger.artemis.components.EditMenu.access$400(EditMenu.java:70)
at uk.ac.sanger.artemis.components.EditMenu$5.actionPerformed(EditMenu.java:351)
at java.desktop/javax.swing.AbstractButton.fireActionPerformed(AbstractButton.java:1967)
at java.desktop/javax.swing.AbstractButton$Handler.actionPerformed(AbstractButton.java:2308)
at java.desktop/javax.swing.DefaultButtonModel.fireActionPerformed(DefaultButtonModel.java:405)
at java.desktop/javax.swing.DefaultButtonModel.setPressed(DefaultButtonModel.java:262)
at java.desktop/javax.swing.AbstractButton.doClick(AbstractButton.java:369)
at java.desktop/javax.swing.plaf.basic.BasicMenuItemUI.doClick(BasicMenuItemUI.java:1020)
at java.desktop/com.apple.laf.AquaMenuItemUI.doClick(AquaMenuItemUI.java:157)
at java.desktop/javax.swing.plaf.basic.BasicMenuItemUI$Handler.mouseReleased(BasicMenuItemUI.java:1064)
at java.desktop/java.awt.Component.processMouseEvent(Component.java:6635)
at java.desktop/javax.swing.JComponent.processMouseEvent(JComponent.java:3342)
at java.desktop/java.awt.Component.processEvent(Component.java:6400)
at java.desktop/java.awt.Container.processEvent(Container.java:2263)
at java.desktop/java.awt.Component.dispatchEventImpl(Component.java:5011)
at java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2321)
at java.desktop/java.awt.Component.dispatchEvent(Component.java:4843)
at java.desktop/java.awt.LightweightDispatcher.retargetMouseEvent(Container.java:4918)
at java.desktop/java.awt.LightweightDispatcher.processMouseEvent(Container.java:4547)
at java.desktop/java.awt.LightweightDispatcher.dispatchEvent(Container.java:4488)
at java.desktop/java.awt.Container.dispatchEventImpl(Container.java:2307)
at java.desktop/java.awt.Window.dispatchEventImpl(Window.java:2772)
at java.desktop/java.awt.Component.dispatchEvent(Component.java:4843)
at java.desktop/java.awt.EventQueue.dispatchEventImpl(EventQueue.java:772)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:721)
at java.desktop/java.awt.EventQueue$4.run(EventQueue.java:715)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:95)
at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:745)
at java.desktop/java.awt.EventQueue$5.run(EventQueue.java:743)
at java.base/java.security.AccessController.doPrivileged(Native Method)
at java.base/java.security.ProtectionDomain$JavaSecurityAccessImpl.doIntersectionPrivilege(ProtectionDomain.java:85)
at java.desktop/java.awt.EventQueue.dispatchEvent(EventQueue.java:742)
at java.desktop/java.awt.EventDispatchThread.pumpOneEventForFilters(EventDispatchThread.java:203)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForFilter(EventDispatchThread.java:124)
at java.desktop/java.awt.EventDispatchThread.pumpEventsForHierarchy(EventDispatchThread.java:113)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:109)
at java.desktop/java.awt.EventDispatchThread.pumpEvents(EventDispatchThread.java:101)
at java.desktop/java.awt.EventDispatchThread.run(EventDispatchThread.java:90)
Thank you in advance!
The text was updated successfully, but these errors were encountered: