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I would expect the chain file to be uploaded to the bucket but instead I am getting Failed to create gs://my-bucjet/GTEX-1117F_h1.chain: No such file or directory.
The communication with GCP works (after setting the GCS_OAUTH_TOKEN path) and this can be seen by doing something simple as bcftools query -l 'gs://my-bucket/file.vcf.gz'.
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Command
I would expect the chain file to be uploaded to the bucket but instead I am getting
Failed to create gs://my-bucjet/GTEX-1117F_h1.chain: No such file or directory
.The communication with GCP works (after setting the
GCS_OAUTH_TOKEN
path) and this can be seen by doing something simple asbcftools query -l 'gs://my-bucket/file.vcf.gz'
.Is
bcftools consensous
supposed to be able to write to GCP? (I can't find any information in the documentation https://samtools.github.io/bcftools/bcftools.html#consensus).The temporary solution is to write locally and then push the result.
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