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LOG.txt
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Distances have not been computed, yet. This will be done now, this step might take a
few minutes when using the peaks. Time for a coffee, tea or mate?
Some profiles are not available as binned profile, yet. Starting to apply the binning
to some (potentially all) profiles. This might take a few minutes. On 5kb resolution
it takes approx. 30 seconds for binning one profile. Time for a coffee, tea or mate?
Binning was applyed to ./example_CTCF/beds/ENCFF582SNT.bed. It took 14.16 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF362OPG.bed. It took 11.86 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF736NYC.bed. It took 12.71 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF089FZZ.bed. It took 12.61 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF740TLU.bed. It took 13.53 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF221SKA.bed. It took 16.76 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF660GHM.bed. It took 16.33 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF096ZTD.bed. It took 10.21 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF827JRI.bed. It took 14.30 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF770BRI.bed. It took 11.53 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF138REW.bed. It took 11.46 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF951PEM.bed. It took 12.00 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF797SDL.bed. It took 12.09 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF205OKL.bed. It took 13.09 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF199YFA.bed. It took 16.28 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF119PKI.bed. It took 13.66 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF240MUS.bed. It took 12.06 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF948CYD.bed. It took 16.97 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF198YOJ.bed. It took 16.64 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF163JHE.bed. It took 15.95 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF596MGE.bed. It took 15.21 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF683EEW.bed. It took 17.65 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF721XKI.bed. It took 10.73 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF278FNP.bed. It took 15.22 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF023LAA.bed. It took 15.38 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF030QAM.bed. It took 10.70 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF111RWV.bed. It took 12.04 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF548ARU.bed. It took 16.28 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF723DCX.bed. It took 12.55 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF005MCX.bed. It took 12.04 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF467CVV.bed. It took 11.56 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF245RYN.bed. It took 11.35 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF337ZMK.bed. It took 11.41 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF624ZSR.bed. It took 11.62 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF608JKY.bed. It took 14.99 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF244QKO.bed. It took 15.92 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF670ULH.bed. It took 10.07 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF832INR.bed. It took 14.52 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF273SBR.bed. It took 10.38 seconds.
Binning was applyed to ./example_CTCF/beds/ENCFF803RIY.bed. It took 15.87 seconds.
Distances have not been computed, yet. This will be done now, this step might take a
few minutes when using the peaks. Time for a coffee, tea or mate?
... 100 distances were computed ...
... 200 distances were computed ...
... 300 distances were computed ...
... 400 distances were computed ...
... 500 distances were computed ...
... 600 distances were computed ...
... 700 distances were computed ...
... 800 distances were computed ...
Done with computing distances, they are now available under: ./example_CTCF/distances_on_bins_GRCh38_5kb.tsv
Clustermap was created and saved into ./example_CTCF/clustermap_bins_GRCh38_5kb.png
Applied agglomerative single-linkage clustering and evaluated its quality.
The following measures represent the clustering quality:
Adjusted Mutual Information: 0.71229
Adjusted Rand Index: 0.58074
Homogeneity Score: 0.79349
Completeness Score: 0.85689