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NEWS
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new for version 1.5.5
=====================
Example code was modified to reduce computation time
new for version 1.5.4
=====================
Added the argument processAll to msviperCombinatorial that allow the evaluation of synergy between pairs showing enrichment not significantly higher than the singe regulons
new for version 1.5.3
=====================
New implementation of the aREA algorithm allowing for missing values and weighting the contribution
of each datapoint in the expression matrix and
new for version 1.5.2
=====================
New function aracne2regulon4cnv to parse ARACNe results generated by using different expression files for regulators and targets
new for version 1.5.1
=====================
Bug fixed in aracne2regulon function
new for version 1.3.2
=====================
Added function msviperClass ro generate instances of the msviper class
new for version 1.3.1
=====================
Use of multiple cores based on the parallel package
new for version 1.1.0
=====================
A bug in aracne2regulon function related to collapsing the regulons at the gene level was fixed
A bug in the aecdf function was fixed
Implemented a new pleiotropy algorithm
aREA function was rewritten with improved performance
Computation of empirical p-values was performed assuming a symmetric distribution of the ES around 0 for the NULL model, increasing in this way the power of the test by a factor of 2
A function to compute the similarity between VIPER signatures (viperSimilarity) was added to the package
new for version 0.99.1
======================
Bug fixed in shadow() function that was crashing when one regulon was completely contained into another regulon.