diff --git a/vignettes/tutorial_ocEAn.R b/vignettes/tutorial_ocEAn.R index ffc8956..35b84bc 100644 --- a/vignettes/tutorial_ocEAn.R +++ b/vignettes/tutorial_ocEAn.R @@ -103,7 +103,10 @@ enzymes <- unique(sub_network_nocofact$attributes$V1) enzymes <- enzymes[!grepl("_[clxmenr]$",enzymes)] #Convert the network into a forest (list of enzymes (trees) with correspoding metabolic signatures (branches)) -sub_forest <- forestMaker(enzymes, sub_network_nocofact$reaction_network, branch_length = c(1,1), remove_reverse = T) +sub_forest <- forestMaker(enzymes, sub_network_nocofact$reaction_network, + branch_length = c(1,1), + remove_reverse = T, + parallel_mcl = T) ################### ##Prepare the metabolic enzyme sets