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liana_env.yml
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liana_env.yml
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name: liana_env
channels:
- anaconda
- r
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1
- _r-mutex=1.0.1
- alabaster=0.7.12
- anndata=0.7.5
- babel=2.9.0
- binutils_impl_linux-64=2.35.1
- blosc=1.21.0
- brotlipy=0.7.0
- bwidget=1.9.14
- bzip2=1.0.8
- c-ares=1.17.1
- ca-certificates=2020.10.14
- cached-property=1.5.2
- cached_property=1.5.2
- cairo=1.16.0
- certifi=2020.6.20
- cffi=1.14.5
- chardet=4.0.0
- colorama=0.4.4
- cryptography=3.4.6
- curl=7.75.0
- cycler=0.10.0
- decorator=4.4.2
- docutils=0.16
- expat=2.2.10
- fontconfig=2.13.1
- freetype=2.10.4
- fribidi=1.0.10
- get_version=2.1
- gettext=0.19.8.1
- git=2.30.2
- graphite2=1.3.13
- gsl=2.6
- h5py=3.1.0
- harfbuzz=2.8.0
- hdf5=1.10.6
- icu=68.1
- idna=2.10
- imagesize=1.2.0
- importlib_metadata=3.7.3
- jinja2=2.11.3
- joblib=1.0.1
- jpeg=9d
- kernel-headers_linux-64=2.6.32
- kiwisolver=1.3.1
- krb5=1.17.2
- lcms2=2.12
- ld_impl_linux-64=2.35.1
- legacy-api-wrap=1.2
- libblas=3.9.0
- libcblas=3.9.0
- libcurl=7.75.0
- libedit=3.1.20191231
- libev=4.33
- libffi=3.3
- libgfortran5=9.3.0
- libglib=2.68.0
- libiconv=1.16
- liblapack=3.9.0
- libllvm10=10.0.1
- libnghttp2=1.43.0
- libopenblas=0.3.12
- libpng=1.6.37
- libssh2=1.9.0
- libtiff=4.2.0
- libuuid=2.32.1
- libv8=8.9.83
- libwebp-base=1.2.0
- libxcb=1.13
- libxml2=2.9.10
- llvmlite=0.36.0
- lz4-c=1.9.3
- lzo=2.10
- make=4.3
- markupsafe=1.1.1
- matplotlib-base=3.3.4
- mock=4.0.3
- natsort=7.1.1
- ncurses=6.2
- networkx=2.5
- numba=0.53.0
- numexpr=2.7.3
- numpy=1.20.1
- olefile=0.46
- openssl=1.1.1k
- packaging=20.9
- pandas=1.2.3
- pango=1.42.4
- patsy=0.5.1
- pcre=8.44
- pcre2=10.36
- perl=5.32.0
- pillow=8.1.2
- pip=20.2.4
- pixman=0.40.0
- pthread-stubs=0.4
- pycparser=2.20
- pygments=2.8.1
- pynndescent=0.5.2
- pyopenssl=20.0.1
- pyparsing=2.4.7
- pysocks=1.7.1
- pytables=3.6.1
- python=3.8.5
- python-dateutil=2.8.1
- python_abi=3.8
- pytz=2021.1
- readline=8.0
- requests=2.25.1
- scanpy=1.7.1
- scikit-learn=0.24.1
- scipy=1.6.1
- seaborn=0.11.1
- seaborn-base=0.11.1
- sed=4.8
- setuptools=50.3.0
- setuptools-scm=6.0.1
- setuptools_scm=6.0.1
- sinfo=0.3.1
- six=1.15.0
- snowballstemmer=2.1.0
- sphinx=3.5.3
- sphinxcontrib-applehelp=1.0.2
- sphinxcontrib-devhelp=1.0.2
- sphinxcontrib-htmlhelp=1.0.3
- sphinxcontrib-jsmath=1.0.1
- sphinxcontrib-qthelp=1.0.3
- sphinxcontrib-serializinghtml=1.1.4
- sqlite=3.33.0
- statsmodels=0.12.2
- stdlib-list=0.7.0
- sysroot_linux-64=2.12
- tbb=2020.2
- threadpoolctl=2.1.0
- tk=8.6.10
- tktable=2.10
- toml=0.10.2
- tornado=6.1
- tqdm=4.59.0
- tzdata=2021a
- umap-learn=0.5.1
- urllib3=1.26.4
- wheel=0.35.1
- xlrd=1.2.0
- xlsxwriter=1.3.7
- xorg-kbproto=1.0.7
- xorg-libice=1.0.10
- xorg-libsm=1.2.3
- xorg-libx11=1.7.0
- xorg-libxau=1.0.9
- xorg-libxdmcp=1.1.3
- xorg-libxext=1.3.4
- xorg-libxrender=0.9.10
- xorg-libxt=1.2.1
- xorg-renderproto=0.11.1
- xorg-xextproto=7.3.0
- xorg-xproto=7.0.31
- xz=5.2.5
- zipp=3.4.1
- zlib=1.2.11
- zstd=1.4.9
- pip:
- affine==2.3.0
- argon2-cffi==20.1.0
- asciitree==0.3.3
- async-generator==1.10
- attrs==20.3.0
- backcall==0.2.0
- bleach==3.3.0
- click==7.1.2
- click-plugins==1.1.1
- cligj==0.7.1
- dask==2021.3.0
- defusedxml==0.7.1
- docrep==0.3.2
- entrypoints==0.3
- enum-tools==0.6.4
- fasteners==0.16
- imageio==2.9.0
- inflect==5.3.0
- ipykernel==5.5.0
- ipython==7.21.0
- ipython-genutils==0.2.0
- ipywidgets==7.6.3
- jedi==0.18.0
- jsonschema==3.2.0
- jupyter-client==6.1.12
- jupyter-core==4.7.1
- jupyterlab-pygments==0.1.2
- jupyterlab-widgets==1.0.0
- leidenalg==0.8.3
- mistune==0.8.4
- nbclient==0.5.3
- nbconvert==6.0.7
- nbformat==5.1.2
- nest-asyncio==1.5.1
- notebook==6.3.0
- numcodecs==0.7.3
- omnipath==1.0.4
- pandocfilters==1.4.3
- parso==0.8.1
- pexpect==4.8.0
- pickleshare==0.7.5
- prometheus-client==0.9.0
- prompt-toolkit==3.0.18
- ptyprocess==0.7.0
- pyrsistent==0.17.3
- python-igraph==0.9.0
- pywavelets==1.1.1
- pyyaml==5.4.1
- pyzmq==22.0.3
- rasterio==1.2.1
- scikit-image==0.18.1
- send2trash==1.5.0
- snuggs==1.4.7
- squidpy==1.1.0
- terminado==0.9.3
- testpath==0.4.4
- texttable==1.6.3
- tifffile==2021.3.17
- traitlets==5.0.5
- typing-extensions==3.7.4.3
- wcwidth==0.2.5
- webencodings==0.5.1
- widgetsnbextension==3.5.1
- wrapt==1.12.1
- xarray==0.17.0
- zarr==2.6.1
prefix: /net/data.isilon/ag-saez/bq_ddimitrov/SOFTWARE/miniconda3/envs/ligrec