Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Set scanpy as a "common" dependency #40

Open
dbdimitrov opened this issue Jul 27, 2023 · 0 comments
Open

Set scanpy as a "common" dependency #40

dbdimitrov opened this issue Jul 27, 2023 · 0 comments
Assignees

Comments

@dbdimitrov
Copy link
Collaborator

Currently scanpy is being used as a core dependency of LIANA.

However, in reality it's used only in a couple of places, the most problematic being the calculation of DEGs within _liana_pipe.py.
If these are changed, then scanpy can be removed from the core dependencies.

@dbdimitrov dbdimitrov self-assigned this Jul 27, 2023
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
Development

No branches or pull requests

1 participant