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Currently scanpy is being used as a core dependency of LIANA.
However, in reality it's used only in a couple of places, the most problematic being the calculation of DEGs within _liana_pipe.py.
If these are changed, then scanpy can be removed from the core dependencies.
The text was updated successfully, but these errors were encountered:
Currently scanpy is being used as a core dependency of LIANA.
However, in reality it's used only in a couple of places, the most problematic being the calculation of DEGs within
_liana_pipe.py
.If these are changed, then scanpy can be removed from the core dependencies.
The text was updated successfully, but these errors were encountered: