diff --git a/environment.yml b/environment.yml new file mode 100644 index 0000000..67bac5f --- /dev/null +++ b/environment.yml @@ -0,0 +1,28 @@ +name: corneto-experiments +channels: + - conda-forge + - defaults +dependencies: + - jupyter==1.1.1 + - networkx==3.4.2 + - numpy==1.26.4 + - pandas==2.2.3 + - pyarrow==18.1.0 + - python-graphviz==0.20.3 + - scanpy==1.10.4 + - scikit-learn==1.6.0 + - scipy==1.14.1 + - seaborn==0.13.2 + - pip: + - cvxpy-base==1.6.0 + - highspy==1.9.0 + - jax==0.4.38 + - keras==3.7.0 + - pcst-fast==1.0.10 + - pyscipopt==5.2.1 + - gurobipy==12.0.0 + - pyscipopt==5.2.1 + - highspy==1.9.0 + - omnipath==1.0.8 + - decoupler==1.8.0 + - cobra==0.29.1