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HIStream

Building from source

Build requirements: JDK 8, Maven

Run mvn clean install to download dependencies and build all sub-modules. The binary distribution zip files can then be found in distribution/target.

Running HIStream

Import Data into the i2b2 Data Warehouse

Easy way:

  1. copy/unzip the binary distribution ..-i2b2.zip (or ..-full.zip) from distribution/target.
  2. adjust the database settings in histream.xml
  3. To import data into i2b2 run startup examples/dwh-eav.xml or startup examples/dwh-flat.txt

Import SKOS ontology into i2b2

  1. copy/unzip the binary distribution ..-full.zip from distribution/target. The plugins histream-skos and histream-i2b2 are needed.
  2. adjust examples/ontology-import.properties
  3. adjust paths to RDF files in example/skos-ontology.properties
  4. Run java -cp "lib\*" de.sekmi.histream.i2b2.ont.Import examples/skos-ontology.properties examples/i2b2-ont-import.properties