trying clang test

Author: Jeremiah Wala

.travis.yml

@@ -2,9 +2,13 @@ language: cpp
 
 compiler: 
 - gcc
+- clang
 
 env: 
   global: 
+  - BOOST_VERSION_MIN="1.59.0"
+  - BOOST_VERSION_MAX="1.60.0" # List of required boost libraries to build"
+  - BOOST_LIBS="test"
   - secure: c7M47d76dYyjOsYiRWdJ7DaKyV6qo9tUk1l+QlSTX5AgfWGGIsI3eWxHrSid/b1PXTVCOQTBwJKlM13gNPO5kLEAxrT/Bl8rtFUQdBwqA5gZaY1Yyt7h51hRR9GADwUY4lmudLBiPRDp8Pd3WSiP+gOud7hA8U/AP0BPBfbhDkhvUC6GqvHzEp28NIHB0nhOv4r4yl7C2UeNk358ipDmYqs89m17TNTmbReYjqiaswYSkhCjikUT33QyDTLwl502NBRIJZpZZZ3imxorSM4A1uQmuq5Ggx4PyODgt8MpzH/bCHeamNFzYCi/JSh+MsuOv6tD6xsM9p1MzI5Fg7eQk+FtdmfQhgyTYjg24Ugyn0rrnu2i26FjLqkX3jqdgIldncoerJZly92+M0wRv4IrjjQLCrNLT2Wv4WRElKR5W2dRSnKBT/vIrfJQU9HwYPvISLS3yhpm9NcZnP09Mfoe3xU1mrWnSfbsbXAQ6tfQ14ysOD2/8RhxG3+0lLqS5s5DWefqtz1ouXviLKPcO08kdlcKgTkbh8nZPJNm8byh01tJe0DRPY7z6TJJRMdE/+Yz9VsKjxs9KautacdJmYruVL6AlHb97FlzhvQhaCU5LpOkw2wO5AHpFfgvaygWvi9RQksrr4AulnAcIE7aikcXJnpEqzgup3AyNzlVFu/s1Fo=
   - secure: 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
 
@@ -18,10 +22,14 @@ before_install:
 - sudo update-alternatives --install /usr/bin/gcov gcov /usr/bin/gcov-4.8 20
 - sudo update-alternatives --config gcc
 - sudo update-alternatives --config g++
+- if [ "${TRAVIS_BRANCH}" = "master" ]; then export BOOST_VERSION="${BOOST_VERSION_MIN}"; else export BOOST_VERSION="${BOOST_VERSION_MAX}"; fi
+- if [ -n "${BOOST_VERSION}" ]; then export BOOST_ROOT="${TRAVIS_BUILD_DIR}/../boost-trunk"; export CMAKE_MODULE_PATH="${BOOST_ROOT}"; fi
 - if [ "${CXX}" = "g++" ]; then export CXX="$(which g++-4.8)"; export CC="$(which gcc-4.8)"; fi
 - if [ "${TRAVIS_OS_NAME}" = "osx" -a "${CXX}" = "clang++" ]; then export CXX="$(which c++)"; export CC="$(which cc)"; fi
 
 script: 
+- if [ "$CXX" == "clang++" ]; then .travis_scripts/clang.sh; fi
+- if [ "$CXX" == "g++"     ]; then .travis_scripts/gcc.sh; fi
 - ./configure && make
 
 after_success: 

LICENSE

@@ -1,69 +1,13 @@
-[Files in this distribution outwith the cram/ subdirectory are distributed
-according to the terms of the following MIT/Expat license.]
+Copyright 2016 Jeremiah A. Wala
 
-The MIT/Expat License
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
 
-Copyright (C) 2012-2014 Genome Research Ltd.
+    http://www.apache.org/licenses/LICENSE-2.0
 
-Permission is hereby granted, free of charge, to any person obtaining a copy
-of this software and associated documentation files (the "Software"), to deal
-in the Software without restriction, including without limitation the rights
-to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-copies of the Software, and to permit persons to whom the Software is
-furnished to do so, subject to the following conditions:
-
-The above copyright notice and this permission notice shall be included in
-all copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL
-THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
-FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER
-DEALINGS IN THE SOFTWARE.
-
-
-[Files within the cram/ subdirectory in this distribution are distributed
-according to the terms of the following Modified 3-Clause BSD license.]
-
-The Modified-BSD License
-
-Copyright (C) 2012-2014 Genome Research Ltd.
-
-Redistribution and use in source and binary forms, with or without
-modification, are permitted provided that the following conditions are met:
-
-1. Redistributions of source code must retain the above copyright notice,
-   this list of conditions and the following disclaimer.
-
-2. Redistributions in binary form must reproduce the above copyright notice,
-   this list of conditions and the following disclaimer in the documentation
-   and/or other materials provided with the distribution.
-
-3. Neither the names Genome Research Ltd and Wellcome Trust Sanger Institute
-   nor the names of its contributors may be used to endorse or promote products
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-
-THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS "AS IS"
-AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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-OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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-[The use of a range of years within a copyright notice in this distribution
-should be interpreted as being equivalent to a list of years including the
-first and last year specified and all consecutive years between them.
-
-For example, a copyright notice that reads "Copyright (C) 2005, 2007-2009,
-2011-2012" should be interpreted as being identical to a notice that reads
-"Copyright (C) 2005, 2007, 2008, 2009, 2011, 2012" and a copyright notice
-that reads "Copyright (C) 2005-2012" should be interpreted as being identical
-to a notice that reads "Copyright (C) 2005, 2006, 2007, 2008, 2009, 2010,
-2011, 2012".]
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.