NAMESPACE

# Generated by roxygen2: do not edit by hand

export(AddFactor)
export(AllMarker)
export(DimPlot)
export(FilterPlot)
export(Heat)
export(InPlot)
export(MSC)
export(PCPlot)
export(SIMPLS)
export(SubSet)
export(UMAPlot)
export(ViolinPlot)
export(read10Xgenomics)
export(readHTSeqdata)
export(readscdata)
export(scCluster)
export(scDEG)
export(scDisperse)
export(scFilter)
export(scMarker)
export(scMultiIntegrate)
export(scNormalize)
export(scPCA)
export(scScale)
export(scTSNE)
export(scUMAP)
exportClasses(RISCdata)
import(RColorBrewer)
import(ggplot2)
importFrom(FNN,get.knn)
importFrom(MASS,glm.nb)
importFrom(Matrix,colMeans)
importFrom(Matrix,colSums)
importFrom(Matrix,mean)
importFrom(Matrix,readMM)
importFrom(Matrix,rowMeans)
importFrom(Matrix,rowSums)
importFrom(Rtsne,Rtsne)
importFrom(data.table,fread)
importFrom(densityClust,densityClust)
importFrom(densityClust,findClusters)
importFrom(doParallel,registerDoParallel)
importFrom(foreach,"%dopar%")
importFrom(foreach,foreach)
importFrom(grDevices,col2rgb)
importFrom(grDevices,colorRampPalette)
importFrom(gridExtra,grid.arrange)
importFrom(igraph,cluster_louvain)
importFrom(igraph,graph_from_data_frame)
importFrom(igraph,simplify)
importFrom(irlba,irlba)
importFrom(matrixStats,colSds)
importFrom(matrixStats,rowMedians)
importFrom(matrixStats,rowSds)
importFrom(methods,as)
importFrom(methods,new)
importFrom(pbmcapply,pbmclapply)
importFrom(pbmcapply,pbmcmapply)
importFrom(pheatmap,pheatmap)
importFrom(stats,"contrasts<-")
importFrom(stats,aggregate)
importFrom(stats,as.formula)
importFrom(stats,contr.sum)
importFrom(stats,cutree)
importFrom(stats,dist)
importFrom(stats,gaussian)
importFrom(stats,glm)
importFrom(stats,ks.test)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,p.adjust)
importFrom(stats,pchisq)
importFrom(stats,poisson)
importFrom(stats,qnorm)
importFrom(stats,quantile)
importFrom(stats,quasipoisson)
importFrom(stats,reshape)
importFrom(stats,sd)
importFrom(stats,smooth)
importFrom(stats,var)
importFrom(umap,umap)
importFrom(utils,head)
importFrom(utils,read.table)
useDynLib(RISC)