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configs/isolate_mode.info']" finished abnormally, OS return value: -7 #337

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peiyaohu opened this issue Jul 17, 2024 · 0 comments
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@peiyaohu
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For a bacterial genome: sequenced by Illumina, 10Gb size. I conducted the following command:

Command line: /public/home/software/opt/bio/software/SPAdes/3.15.2//bin/spades.py -o /public/home/pyhu/project/W240603023
-WGS-12ea/D2405270900_0108/240618_SEQ113_DP8480009019BR_L01_SP2406060397/D2405270900_0108-out/spades_assembly -k 27
--threads 32 --isolate -1 /public/home/pyhu/project/W240603023-WGS-12ea/D2405270900_0108/240618_SEQ113_DP84800
09019BR_L01_SP2406060397/DP8480009019BR_L01_266_1.fq.gz -2 /public/home/pyhu/project/W240603023-WGS-12ea/D2405270900_0108/2
40618_SEQ113_DP8480009019BR_L01_SP2406060397/DP8480009019BR_L01_266_2.fq.gz -m 1024

System information:
SPAdes version: 3.15.2
Python version: 2.7.5
OS: Linux-3.10.0-862.el7.x86_64-x86_64-with-centos-7.5.1804-Core

Threads: 32
Memory limit (in Gb): 1024

== Error == system call for: "['/public/home/software/opt/bio/software/SPAdes/3.15.2/bin/spades-core', '/public/home/pyhu/project/W240603023-WGS-12ea/D2405270900_0108/240618_SEQ113_DP8480009019BR_L01_SP2406060397/D2405270900_0108-out/spades_assembly/K27/configs/config.info', '/public/home/pyhu/project/W240603023-WGS-12ea/D2405270900_0108/240618_SEQ113_DP8480009019BR_L01_SP2406060397/D2405270900_0108-out/spades_assembly/K27/configs/isolate_mode.info']" finished abnormally, OS return value: -7

How to solve this problem? Thanks!

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