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I am trying to use rmangal to do some network analysis of your full dataset of networks. I apologize if there is a simple solution, but for some reason, I encounter these errors when scaling up the "get_collection" function from a few networks to all of the networks in your dataset.
For example:
search_networks("", verbose = F) %>% get_collection()
Error in names(mg_network$interactions) <- *vtmp* :
attempt to set an attribute on NULL
I also tried getting the collection by network ID. If you get collections by a smaller subset of network ID, it works.
all_networks <- search_networks("", verbose = F) # 1487 networks
get_collection(c(all_networks$id[1000:1300]), verbose = F) %>% combine_mgNetworks()
But if you try using all network IDs, you run into the same error above.
get_collection(c(all_networks$id[1:1487]), verbose = F) %>% combine_mgNetworks()
Error in names(mg_network$interactions) <- *vtmp* :
attempt to set an attribute on NULL
I would appreciate any help or thoughts on accessing the full dataset in Mangal. Thank you very much for your help!
The text was updated successfully, but these errors were encountered:
Hi there,
I am trying to use rmangal to do some network analysis of your full dataset of networks. I apologize if there is a simple solution, but for some reason, I encounter these errors when scaling up the "get_collection" function from a few networks to all of the networks in your dataset.
For example:
search_networks("", verbose = F) %>% get_collection()
Error in names(mg_network$interactions) <-
*vtmp*
:attempt to set an attribute on NULL
I also tried getting the collection by network ID. If you get collections by a smaller subset of network ID, it works.
all_networks <- search_networks("", verbose = F) # 1487 networks
get_collection(c(all_networks$id[1000:1300]), verbose = F) %>% combine_mgNetworks()
But if you try using all network IDs, you run into the same error above.
get_collection(c(all_networks$id[1:1487]), verbose = F) %>% combine_mgNetworks()
Error in names(mg_network$interactions) <-
*vtmp*
:attempt to set an attribute on NULL
I would appreciate any help or thoughts on accessing the full dataset in Mangal. Thank you very much for your help!
The text was updated successfully, but these errors were encountered: