-
Notifications
You must be signed in to change notification settings - Fork 2
/
Copy pathREADME.Rmd
65 lines (46 loc) · 2.54 KB
/
README.Rmd
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
ritis
=====
```{r echo=FALSE}
knitr::opts_chunk$set(
comment = "#>",
collapse = TRUE,
warning = FALSE,
message = FALSE
)
```
[](https://www.repostatus.org/#active)
[](https://cranchecks.info/pkgs/ritis)
[](https://github.com/ropensci/ritis/actions?query=workflow%3AR-check)
[](https://codecov.io/gh/ropensci/ritis)
[](https://github.com/r-hub/cranlogs.app)
[](https://cran.r-project.org/package=ritis)
An interface to the Integrated Taxonomic Information System (ITIS)
* ITIS API Docs: <https://www.itis.gov/ws_description.html>
* Solr service: <https://www.itis.gov/solr_documentation.html>
* taxize book: <https://taxize.dev/>
* ritis docs: <https://docs.ropensci.org/ritis/>
How to cite ITIS. From <https://itis.gov/citation.html>
To cite data obtained from ITIS, the following citation format is offered as a suggestion:
Retrieved [month, day, year], from the Integrated Taxonomic Information System on-line database, http://www.itis.gov.
ITIS is one of many different taxonomic data sources. Other include: Catalogue of Life (and COL+), NCBI taxonomy, International Plant Names Index, Index Fungorum, and more. The Wikipedia entry (<https://en.wikipedia.org/wiki/Integrated_Taxonomic_Information_System>) states that ITIS has a North American focus, but includes many taxa not in North America.
## Terminology
* "mononomial": a taxonomic name with one part, e.g, _Poa_
* "binomial": a taxonomic name with two parts, e.g, _Poa annua_
* "trinomial": a taxonomic name with three parts, e.g, _Poa annua annua_
## Installation
Stable, CRAN version
```{r eval=FALSE}
install.packages("ritis")
```
Dev version
```{r eval=FALSE}
remotes::install_github("ropensci/ritis")
```
```{r}
library("ritis")
```
## Meta
* Please [report any issues or bugs](https://github.com/ropensci/ritis/issues).
* License: MIT
* Get citation information for `ritis` in R doing `citation(package = 'ritis')`
* Please note that this package is released with a [Contributor Code of Conduct](https://ropensci.org/code-of-conduct/). By contributing to this project, you agree to abide by its terms.