ml-verse_devel.Dockerfile

# syntax=docker/dockerfile:1

FROM nvidia/cuda:11.8.0-cudnn8-devel-ubuntu22.04

ENV R_VERSION="devel"
ENV R_HOME="/usr/local/lib/R"
ENV TZ="Etc/UTC"

COPY scripts/install_R_source.sh /rocker_scripts/install_R_source.sh
RUN /rocker_scripts/install_R_source.sh

ENV CRAN="https://cloud.r-project.org"
ENV LANG=en_US.UTF-8

COPY scripts/bin/ /rocker_scripts/bin/
COPY scripts/setup_R.sh /rocker_scripts/setup_R.sh
RUN <<EOF
if grep -q "1000" /etc/passwd; then
    userdel --remove "$(id -un 1000)";
fi
/rocker_scripts/setup_R.sh
EOF

CMD ["R"]

ENV NVBLAS_CONFIG_FILE="/etc/nvblas.conf"

COPY scripts/config_R_cuda.sh /rocker_scripts/config_R_cuda.sh
RUN /rocker_scripts/config_R_cuda.sh

ENV PYTHON_CONFIGURE_OPTS="--enable-shared"
ENV RETICULATE_AUTOCONFIGURE="0"
ENV PURGE_BUILDDEPS="false"
ENV VIRTUAL_ENV="/opt/venv"
ENV PATH="${VIRTUAL_ENV}/bin:${PATH}:${CUDA_HOME}/bin"

COPY scripts/install_python.sh /rocker_scripts/install_python.sh
RUN /rocker_scripts/install_python.sh

COPY scripts/install_tidyverse.sh /rocker_scripts/install_tidyverse.sh
RUN /rocker_scripts/install_tidyverse.sh

ENV S6_VERSION="v2.1.0.2"
ENV RSTUDIO_VERSION="2024.09.1+394"
ENV DEFAULT_USER="rstudio"

COPY scripts/install_rstudio.sh /rocker_scripts/install_rstudio.sh
COPY scripts/install_s6init.sh /rocker_scripts/install_s6init.sh
COPY scripts/default_user.sh /rocker_scripts/default_user.sh
COPY scripts/init_set_env.sh /rocker_scripts/init_set_env.sh
COPY scripts/init_userconf.sh /rocker_scripts/init_userconf.sh
COPY scripts/pam-helper.sh /rocker_scripts/pam-helper.sh
RUN /rocker_scripts/install_rstudio.sh

EXPOSE 8787
CMD ["/init"]

COPY scripts/install_pandoc.sh /rocker_scripts/install_pandoc.sh
RUN /rocker_scripts/install_pandoc.sh

COPY scripts/install_quarto.sh /rocker_scripts/install_quarto.sh
RUN /rocker_scripts/install_quarto.sh

COPY scripts/install_verse.sh /rocker_scripts/install_verse.sh
COPY scripts/install_texlive.sh /rocker_scripts/install_texlive.sh
RUN /rocker_scripts/install_verse.sh

COPY scripts/install_geospatial.sh /rocker_scripts/install_geospatial.sh
RUN /rocker_scripts/install_geospatial.sh

COPY scripts /rocker_scripts