diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml index c9f0165d..4bbce750 100644 --- a/.github/workflows/pkgdown.yaml +++ b/.github/workflows/pkgdown.yaml @@ -9,7 +9,7 @@ on: types: [published] workflow_dispatch: -name: pkgdown +name: pkgdown.yaml permissions: read-all diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml index fefc52e2..98822609 100644 --- a/.github/workflows/test-coverage.yaml +++ b/.github/workflows/test-coverage.yaml @@ -6,7 +6,7 @@ on: pull_request: branches: [main, master] -name: test-coverage +name: test-coverage.yaml permissions: read-all diff --git a/README.Rmd b/README.Rmd index ae349352..cbcf6b44 100644 --- a/README.Rmd +++ b/README.Rmd @@ -15,7 +15,7 @@ knitr::opts_chunk$set( [![R-CMD-check](https://github.com/rnabioco/valr/actions/workflows/check-standard.yaml/badge.svg)](https://github.com/rnabioco/valr/actions/workflows/check-standard.yaml) -[![codecov](https://codecov.io/gh/rnabioco/valr/branch/master/graph/badge.svg)](https://app.codecov.io/gh/rnabioco/valr) +[![codecov](https://codecov.io/github/rnabioco/valr/graph/badge.svg?token=nvYoQCoEtN)](https://codecov.io/github/rnabioco/valr) [![](https://www.r-pkg.org/badges/version/valr)](https://CRAN.R-project.org/package=valr) @@ -39,6 +39,7 @@ pak::pak("rnabioco/valr") ::: ## valr Example + Functions in valr have similar names to their BEDtools counterparts, and so will be familiar to users coming from the BEDtools suite. Unlike other tools that wrap BEDtools and write temporary files to disk, valr tools run natively in memory. Similar to [pybedtools](https://daler.github.io/pybedtools/#why-pybedtools), valr has a terse syntax: ```{r syntax_demo, message = FALSE} diff --git a/README.md b/README.md index d0747177..7e911407 100644 --- a/README.md +++ b/README.md @@ -4,7 +4,7 @@ [![R-CMD-check](https://github.com/rnabioco/valr/actions/workflows/check-standard.yaml/badge.svg)](https://github.com/rnabioco/valr/actions/workflows/check-standard.yaml) -[![codecov](https://codecov.io/gh/rnabioco/valr/branch/master/graph/badge.svg)](https://app.codecov.io/gh/rnabioco/valr) +[![codecov](https://codecov.io/github/rnabioco/valr/graph/badge.svg?token=nvYoQCoEtN)](https://codecov.io/github/rnabioco/valr) [![](https://www.r-pkg.org/badges/version/valr)](https://CRAN.R-project.org/package=valr)