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Increase memory when bbduk runs out #82

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MarieLataretu opened this issue Jan 4, 2024 · 2 comments
Open

Increase memory when bbduk runs out #82

MarieLataretu opened this issue Jan 4, 2024 · 2 comments

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@MarieLataretu
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bbduk can use a lot of memory and that can cause it to fail, especially in a shared computing environment like an HPC. Detect this, and auto increase the amount of memory reserved for the task then rerun the process. Additionally, increase the default memory reservation.
@MarieLataretu
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The command exit status of the bbduk process is 1, if it runs out of memory

@hoelzer
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hoelzer commented Aug 8, 2024

#101 fixes this issue with BBDUK

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@hoelzer @MarieLataretu