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ypestis_data_curated.csv
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ypestis_data_curated.csv
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Name Source Niche Source Type Source Details Collection Year Continent Country Region District City Latitude Longitude Species
ERR9964620 Human Human human 1996 Africa Madagascar Amoron'i Mania Ambositra IlakaCentre -20.3333 47.15 Yersinia pestis
ERR9966563 Human Human human 1977 Africa Madagascar Vakinankaratra Antanifotsy -19.65 47.3167 Yersinia pestis
ERR9966564 Human Human human 1969 Africa Madagascar Amoron'i Mania Fandriana -20.2333 47.3833 Yersinia pestis
ERR9966565 Human Human human 1982 Africa Madagascar Amoron'i Mania Ambositra Andina -20.5167 47.15 Yersinia pestis
ERR9966566 Human Human human 1983 Africa Madagascar Amoron'i Mania Ambositra Ambovombe -20.7833 47.0667 Yersinia pestis
ERR9966567 Human Human human 1983 Africa Madagascar Amoron'i Mania Ambositra Tsarasoatra -20.4333 47.2333 Yersinia pestis
ERR9966568 Human Human human 1994 Africa Madagascar Amoron'i Mania Ambositra Ambohimilanja -20.6667 46.6333 Yersinia pestis
ERR9964621 Human Human human 1998 Africa Madagascar Amoron'i Mania Ambositra Ambositra -20.5167 47.25 Yersinia pestis
ERR9966569 Human Human human 1996 Africa Madagascar Amoron'i Mania Ambositra Ambositra II -20.5167 47.25 Yersinia pestis
ERR9966570 Human Human human 1996 Africa Madagascar Amoron'i Mania Ambositra Ambositra I -20.5167 47.25 Yersinia pestis
ERR9966571 Human Human human 1994 Africa Madagascar Amoron'i Mania Ambositra Ambatomarina -20.5833 47.0167 Yersinia pestis
ERR9966572 Wild Animal Rodent rat 1998 Africa Madagascar Amoron'i Mania Ambositra Ambositra -20.5167 47.25 Yersinia pestis
ERR9966575 Human Human human 1988 Africa Madagascar Amoron'i Mania Ambositra Tsarasaotra -20.4333 47.2333 Yersinia pestis
SRR21998205 Human Human human 1997 Africa Madagascar -18.88010041 47.53932084 Yersinia pestis
SRR21998206 Wild Animal Invertebrate Xenopsylla cheopis; homogenate 1997 Africa Madagascar -18.88010041 47.53932084 Yersinia pestis
SRR21998207 Wild Animal Invertebrate Xenopsylla cheopis; homogenate 1995 Africa Madagascar -15.71338643 46.32068495 Yersinia pestis
SRR21998208 Human Human human 1997 Africa Madagascar -18.88010041 47.53932084 Yersinia pestis
SRR21998209 Human Human human 1997 Africa Madagascar -18.88010041 47.53932084 Yersinia pestis
SRR21998211 Wild Animal Invertebrate Xenopsylla cheopis; homogenate 1997 Africa Madagascar -18.90721957 47.51933343 Yersinia pestis
SRR21998212 Wild Animal Invertebrate Xenopsylla cheopis; homogenate 1997 Africa Madagascar -18.90721957 47.51933343 Yersinia pestis
SRR21998214 Wild Animal Rodent Rattus norvegicus; spleen 1997 Africa Madagascar -18.90721957 47.51933343 Yersinia pestis
SRR21998215 Human Human Homo sapiens; liver 1995 Africa Madagascar -15.71338643 46.32068495 Yersinia pestis
SRR21998218 Wild Animal Invertebrate Xenopsylla cheopis; homogenate 1995 Africa Madagascar -15.70965362 46.31749746 Yersinia pestis
SRR21998205p Human Human human 1997 Africa Madagascar -18.88010041 47.53932084 Yersinia pestis
ERR9964621inter Human Human human 1998 Africa Madagascar Amoron'i Mania Ambositra Ambositra -20.5167 47.25 Yersinia pestis
SRR21998218n Wild Animal Invertebrate Xenopsylla cheopis; homogenate 1995 Africa Madagascar -15.70965362 46.31749746 Yersinia pestis