.travis.yml

language: python
sudo: required
dist: trusty
group: edge
python: 3.6
env:
  - DAMMIT_DB_DIR=$HOME/dammitdb
before_install:
  - sudo apt-get -qq update
install:
  - sudo apt-get update -y
  - sudo apt-get install build-essential curl file git
  - wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh && bash miniconda.sh -b -p $HOME/miniconda
  - export PATH="$HOME/miniconda/bin:$PATH"
  - hash -r
  - conda config --set always_yes yes --set changeps1 no
  - conda update -q conda
  - conda info -a
  - conda config --add channels defaults
  - conda config --add channels bioconda
  - conda config --add channels conda-forge
  - conda create -n test python=$TRAVIS_PYTHON_VERSION
  - source activate test
  - conda install python numpy pandas numexpr khmer sphinx sphinx_rtd_theme pytest pytest-runner doit matplotlib shmlast infernal hmmer transdecoder last busco=3.0.2 parallel bioconductor-seqlogo
  - python setup.py install
before_script:
  - dammit databases --install --quick

script: make ci-test