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README
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README
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Table of Contents:
I. Introduction
II. Dependencies
III. Licensce (CRAPL v0)
===============================================================================
I. Introduction
===============================================================================
This package contains a number of utility functions and full-fledged software
that I wrote to do two-color, super-resolution colocalization. Full details
will be provided in a paper tentatively scheduled to be ready for submission in
Winter/Spring 2011.
Vague instructions on use is available on the Yildiz Lab wiki at
http://www.ocf.berkeley.edu/~yildiz/wiki/index.php?title=Peter%27s_Lab_Methods
===============================================================================
II. Dependencies
===============================================================================
This code requires:
* Python (v2.6 or better --- certain functions use 2.6s exception catching syntax)
* SciPy (Tested with 0.8.0b1) - http://scipy.org/Download
* Matplotlib (Tested with 0.99.3) - http://matplotlib.sourceforge.net/
o pyfits (The important bit happens to be included, and is Copyright (C) 2005
Association of Universities for Research in Austronomy (AURA) and covered under
a separate license, available in this repo under AURA-LICENSE or at
www.stsci.edu/resources/software_hardware/pyraf/LICENSE)
- http://www.stsci.edu/resources/software_hardware/pyfits
The Enthought Python Distribution is especially nice for getting everything you need,
and is free for academic use.
Critical steps assume that you have access to WHTrackHighRes, a FIONA program
written (I believe) by Bruce Cohen. Contact Ahmet Yildiz ([email protected])
for access to this. Alternatively, you can write your own---output is assumed
to be a tab-separated list of positions in nanometers, with two header lines
and the following column order: x, y, sx, sy, N, where N is your best attempt
at guessing the number of photons
===============================================================================
III. License
===============================================================================
The included software was written by Peter Combs ([email protected]),
and is released under the CRAPL v0 beta license. For more details, see
CRAPL-LICENSE.txt