From fc0e04fa57117eba23612464a9ffb48a75ce5b42 Mon Sep 17 00:00:00 2001 From: nsheff Date: Thu, 10 Oct 2024 08:48:07 -0400 Subject: [PATCH] lint --- refgenconf/refgenconf.py | 22 +++++++++++++--------- tests/conftest.py | 1 + 2 files changed, 14 insertions(+), 9 deletions(-) diff --git a/refgenconf/refgenconf.py b/refgenconf/refgenconf.py index 2cc703a..726d720 100755 --- a/refgenconf/refgenconf.py +++ b/refgenconf/refgenconf.py @@ -1020,9 +1020,11 @@ def get_symlink_paths(self, genome, asset=None, tag=None, all_aliases=False): if asset: tag = validate_tag(tag or self.get_default_tag(genome, asset)) return { - a: os.path.join(self.alias_dir, a, asset, tag) - if asset - else os.path.join(self.alias_dir, a) + a: ( + os.path.join(self.alias_dir, a, asset, tag) + if asset + else os.path.join(self.alias_dir, a) + ) for a in alias } @@ -1782,9 +1784,9 @@ def list_seek_keys_values(self, genomes=None, assets=None): if not tag_seek_keys: raise MissingAssetError() for seek_key_name in tag_seek_keys: - ret[genome_name][asset_name][tag_name][ - seek_key_name - ] = self.seek(genome_name, asset_name, tag_name, seek_key_name) + ret[genome_name][asset_name][tag_name][seek_key_name] = ( + self.seek(genome_name, asset_name, tag_name, seek_key_name) + ) return ret def get_local_data_str(self, genome=None, order=None): @@ -1871,9 +1873,11 @@ def listr( genomes = genome if isinstance(genome, list) else [genome] if genome is not None: genome_digests = [ - g - if g in aliases_by_digest.keys() - else digests_by_alias.get(g, None) + ( + g + if g in aliases_by_digest.keys() + else digests_by_alias.get(g, None) + ) for g in genomes ] if genome_digests is None: diff --git a/tests/conftest.py b/tests/conftest.py index 4694393..b5c1e2c 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -1,4 +1,5 @@ """ Test suite shared objects and setup """ + import os import random import shutil