From e3f2544596ec4033613e19b754797d2364e5297b Mon Sep 17 00:00:00 2001
From: mirpedrol <mirp.julia@gmail.com>
Date: Mon, 5 Sep 2022 10:42:32 +0200
Subject: [PATCH] allow dashes in genome names

---
 refgenconf/refgenconf.py | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/refgenconf/refgenconf.py b/refgenconf/refgenconf.py
index 689eba0..20f1384 100755
--- a/refgenconf/refgenconf.py
+++ b/refgenconf/refgenconf.py
@@ -4226,7 +4226,7 @@ def _populate_refgenie_registry_path(rgc, glob, seek_method_name, remote_class=N
     :param str remote_class: remote data provider class. Used only in remote=True
     :return dict | str | list: modified input dict with refgenie paths populated
     """
-    p = re.compile("refgenie://([A-Za-z0-9_/\.\:]+)?")
+    p = re.compile("refgenie://([A-Za-z0-9_\-/\.\:]+)?")
     partial_args = dict()
 
     # prepare partial function based on operation mode