diff --git a/refgenconf/populator.py b/refgenconf/populator.py index cb85972..7939203 100644 --- a/refgenconf/populator.py +++ b/refgenconf/populator.py @@ -57,14 +57,14 @@ def get_asset_tag(genome, asset): return namespaces["project"]["refgenie"]["tag_overrides"][genome][asset] except KeyError: default_tag = rgc.get_default_tag(genome=genome, asset=asset) - _LOGGER.info( + _LOGGER.debug( f"Refgenie asset ({genome}/{asset}) tag not specified in `refgenie.tag_overrides` section. " f"Using the default tag: {default_tag}" ) return default_tag except TypeError: default_tag = rgc.get_default_tag(genome=genome, asset=asset) - _LOGGER.warn(f"tag_overrides section is malformed. Using default.") + _LOGGER.warning(f"tag_overrides section is malformed. Using default.") return default_tag # Restructure the seek key paths to make them accessible with @@ -78,7 +78,7 @@ def get_asset_tag(genome, asset): try: paths_dict[g][k] = v[tag] except KeyError: - _LOGGER.warn( + _LOGGER.warning( f"Can't find tag '{tag}' for asset '{g}/{k}', as specified in your project config. Using default." ) paths_dict[g][k] = v[rgc.get_default_tag(genome=g, asset=k)] @@ -97,7 +97,7 @@ def get_asset_tag(genome, asset): except KeyError: _LOGGER.debug("Did not find path_overrides section") except TypeError: - _LOGGER.warn("Warning: path_overrides is not iterable") + _LOGGER.warning("Warning: path_overrides is not iterable") # print(paths_dict) # Provide these values under the 'refgenie' namespace