diff --git a/asset_classes/bed_asset_class.yaml b/asset_classes/bed_asset_class.yaml new file mode 100644 index 0000000..f6fd09c --- /dev/null +++ b/asset_classes/bed_asset_class.yaml @@ -0,0 +1,9 @@ +name: bed +version: 0.0.1 +description: Genomic feature annotations asset which provides access to all annotated transcripts in BED format +seek_keys: + bed: + value: "{genome}.bed.gz" + type: file + description: BED annotation file +parents: [] \ No newline at end of file diff --git a/recipes/bed12_asset_recipe.yaml b/recipes/bed12_asset_recipe.yaml new file mode 100644 index 0000000..b7eb9ab --- /dev/null +++ b/recipes/bed12_asset_recipe.yaml @@ -0,0 +1,14 @@ +name: bed12 +version: 0.0.1 +output_asset_class: bed +description: Genomic feature annotations in BED12 format +inputs: + files: + bed: + description: Genomic feature annotations in Browser Extensible Data (BED12) format + params: {} + assets: {} +container: databio/refgenie +command_template_list: + - cp {{files.bed}} {{asset_outfolder}}/{{genome}}.bed.gz +default_tag: "default" \ No newline at end of file