-
Notifications
You must be signed in to change notification settings - Fork 4
/
pyproject.toml
126 lines (114 loc) · 2.04 KB
/
pyproject.toml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
[build-system]
requires = ["setuptools>=45", "wheel", "setuptools-scm[toml]>=6.2"]
build-backend = "setuptools.build_meta"
[tool.setuptools_scm]
[tool.setuptools.packages]
find = {}
[project]
name = "efaar_benchmarking"
authors = [
{ name = "Recursion Pharmaceuticals", email = "[email protected]" },
]
readme = "README.md"
classifiers = [
"Operating System :: OS Independent",
"Programming Language :: Python",
"Programming Language :: Python :: 3",
]
keywords = ["efaar_benchmarking"]
requires-python = ">=3.11"
dynamic = ["version"]
dependencies = [
'geomloss',
'huggingface_hub',
'joblib',
'matplotlib',
'matplotlib_venn',
'numpy',
'pandas',
'pyarrow',
's3fs',
'scanpy',
'scikit-learn',
'scipy',
'scvi-tools',
'seaborn',
'torch',
'upsetplotly',
'wget',
]
[project.optional-dependencies]
dev = [
'bandit[toml]',
'black',
'coverage',
'docstr-coverage',
'flake8',
'isort',
'mypy',
'pre-commit',
'pytest',
'pytest-cov',
'pyupgrade',
'radon',
'types-pkg_resources',
'types-setuptools',
'tox',
'validate-pyproject[all]',
'jupyterlab',
]
[tool.distutils.bdist_wheel]
universal = true
[tool.pytest.ini_options]
addopts = [
"--ignore",
"setup.py",
"--ignore",
"run_test.py",
"--tb",
"native",
"--strict-markers",
"--durations=20",
"--cov-report",
"term-missing",
"--cov=efaar_benchmarking",
]
testpaths = ["tests"]
env = ["PYTHONHASHSEED=0"]
[tool.mypy]
files = "efaar_benchmarking"
python_version = "3.11"
ignore_missing_imports = true
show_error_codes = true
# strict = true
allow_untyped_calls = true
[tool.isort]
profile = "black"
py_version = "auto"
line_length = 120
[tool.bandit]
exclude = "tests"
[tool.black]
line-length = 120
target-version = ["py311"]
[tool.ruff]
select = ["E", "F"]
ignore = []
exclude = [
".bzr",
".direnv",
".eggs",
".git",
".mypy_cache",
".nox",
".ruff_cache",
".tox",
".venv",
"__pypackages__",
"_build",
"build",
"dist",
"venv",
]
line-length = 120
target-version = "py311"