From 48c3da9f1149abd4cc74d73c7c2e6feb3134ffb6 Mon Sep 17 00:00:00 2001 From: rdk Date: Tue, 25 Jun 2024 14:49:18 +0200 Subject: [PATCH] update testsets script --- misc/test-scripts/testsets.sh | 14 ++++++++++++-- 1 file changed, 12 insertions(+), 2 deletions(-) diff --git a/misc/test-scripts/testsets.sh b/misc/test-scripts/testsets.sh index fc4cc5db..e572a9b5 100755 --- a/misc/test-scripts/testsets.sh +++ b/misc/test-scripts/testsets.sh @@ -332,7 +332,9 @@ analyze() { test ./prank.sh analyze fasta-masked coach420.ds -c config/train-default -cache_datasets 0 -out_subdir TEST/ANALYZE test ./prank.sh analyze fasta-masked holo4k.ds -c config/train-default -cache_datasets 0 -out_subdir TEST/ANALYZE + test ./prank.sh analyze residues joined.ds -c config/train-default -cache_datasets 0 -out_subdir TEST/ANALYZE test ./prank.sh analyze binding-residues joined.ds -c config/train-default -cache_datasets 0 -out_subdir TEST/ANALYZE + test ./prank.sh analyze labeled-residues joined.ds -c config/train-default -cache_datasets 0 -out_subdir TEST/ANALYZE test ./prank.sh analyze chains joined.ds -c config/train-default -cache_datasets 0 -out_subdir TEST/ANALYZE test ./prank.sh analyze chains-residues joined.ds -c config/train-default -cache_datasets 0 -out_subdir TEST/ANALYZE test ./prank.sh analyze aa-propensities joined.ds -c config/train-default -cache_datasets 0 -out_subdir TEST/ANALYZE @@ -340,8 +342,16 @@ analyze() { test ./prank.sh analyze aa-surf-seq-triplets joined.ds -c config/train-default -cache_datasets 0 -out_subdir TEST/ANALYZE test ./prank.sh analyze fasta-raw joined.ds -c config/train-default -cache_datasets 0 -out_subdir TEST/ANALYZE + test ./prank.sh analyze residues holo4k.ds -c config/train-default -cache_datasets 0 -out_subdir TEST/ANALYZE + test ./prank.sh analyze binding-residues holo4k.ds -c config/train-default -cache_datasets 0 -out_subdir TEST/ANALYZE + test ./prank.sh analyze labeled-residues holo4k.ds -c config/train-default -cache_datasets 0 -out_subdir TEST/ANALYZE + test ./prank.sh analyze chains holo4k.ds -c config/train-default -cache_datasets 0 -out_subdir TEST/ANALYZE + test ./prank.sh analyze chains-residues holo4k.ds -c config/train-default -cache_datasets 0 -out_subdir TEST/ANALYZE + } + + transform() { title TRANSFORM COMMANDS @@ -436,8 +446,8 @@ speed() { title SPEED TESTS - misc/test-scripts/benchmark.sh 3 "FPTRAIN" "1 2 4 8 16" "./prank.sh predict fptrain.ds -c config/test-default -out_subdir TEST/SPEED" - misc/test-scripts/benchmark.sh 10 "1FILE" "1" "./prank.sh predict -f distro/test_data/liganated/1aaxa.pdb -c config/test-default -out_subdir TEST/SPEED" + misc/test-scripts/benchmark.sh 1 "FPTRAIN" "1 2 4 8 16" "./prank.sh predict fptrain.ds -c config/test-default -out_subdir TEST/SPEED" + misc/test-scripts/benchmark.sh 5 "1FILE" "1" "./prank.sh predict -f distro/test_data/liganated/1aaxa.pdb -c config/test-default -out_subdir TEST/SPEED" } speed_basic() {