requirements.txt

anndata==0.10.9
array_api_compat==1.9.1
asttokens==3.0.0
build==1.2.2
certifi==2024.8.30
cfgv==3.4.0
charset-normalizer==3.4.0
contourpy==1.3.1
coverage==7.6.8
coveralls==4.0.1
cycler==0.12.1
decorator==5.1.1
distlib==0.3.9
docopt==0.6.2
execnet==2.1.1
executing==2.1.0
filelock==3.16.1
fonttools==4.55.0
fsspec==2024.10.0
h5py==3.12.1
identify==2.6.3
idna==3.10
iniconfig==2.0.0
ipython==8.30.0
jedi==0.19.2
Jinja2==3.1.4
joblib==1.4.2
kiwisolver==1.4.7
legacy-api-wrap==1.4.1
llvmlite==0.43.0
MarkupSafe==3.0.2
matplotlib==3.9.3
matplotlib-inline==0.1.7
mpmath==1.3.0
napari==0.5.4
natsort==8.4.0
networkx==3.4.2
nodeenv==1.9.1
numba==0.60.0
numpy==2.0.2
packaging==24.2
pandas==2.2.3
parso==0.8.4
patsy==1.0.1
pexpect==4.9.0
pillow==11.0.0
platformdirs==4.3.6
pluggy==1.5.0
pooch==1.8.2
POT==0.9.5
pre_commit==4.0.1
prompt_toolkit==3.0.48
ptyprocess==0.7.0
pure_eval==0.2.3
Pygments==2.18.0
pynndescent==0.5.13
pyparsing==3.2.0
pyproject_hooks==1.2.0
pytest==8.3.4
pytest-qt==4.4.0
pytest-xdist==3.6.1
python-dateutil==2.9.0.post0
pytz==2024.2
PyQt5==5.15.11
PyYAML==6.0.2
requests==2.32.3
ruff==0.8.1
scanpy==1.10.4
scikit-learn==1.5.2
scipy==1.14.1
seaborn==0.13.2
session_info==1.0.0
setuptools==75.6.0
six==1.16.0
stack-data==0.6.3
statsmodels==0.14.4
stdlib-list==0.11.0
sympy==1.13.1
threadpoolctl==3.5.0
torch==2.5.1
torchnmf==0.3.5
tqdm==4.67.1
traitlets==5.14.3
typing_extensions==4.12.2
tzdata==2024.2
umap-learn==0.5.7
urllib3==2.2.3
virtualenv==20.28.0
wcwidth==0.2.13
wheel==0.44.0