From a2e72be00d34f2e38a22f296715cb8b669af7c73 Mon Sep 17 00:00:00 2001 From: Luigi Ranghetti <6874239+ranghetti@users.noreply.github.com> Date: Fri, 5 Mar 2021 17:19:58 +0100 Subject: [PATCH] RC v. 1.4.2 (#392) --- DESCRIPTION | 2 +- NEWS.md | 6 ++ R/s2_order.R | 6 +- R/scihub_login.R | 12 ++- cran-comments.md | 22 +++--- docs/404.html | 2 +- docs/CODE-OF-CONDUCT.html | 2 +- docs/ISSUE_TEMPLATE.html | 2 +- docs/LICENSE.html | 2 +- docs/articles/docker.html | 2 +- docs/articles/index.html | 2 +- docs/articles/installation.html | 2 +- docs/articles/outstructure.html | 2 +- docs/articles/sen2r_cmd.html | 2 +- docs/articles/sen2r_gui.html | 2 +- docs/authors.html | 2 +- docs/index.html | 2 +- docs/news/index.html | 52 ++++++++----- docs/pkgdown.yml | 2 +- docs/reference/Rplot001.png | Bin 7140 -> 1011 bytes docs/reference/Rplot002.png | Bin 12556 -> 3649 bytes docs/reference/abs2rel.html | 2 +- docs/reference/add_rgb_image.html | 2 +- docs/reference/add_tile_suffix.html | 2 +- docs/reference/build_example_param_file.html | 4 +- docs/reference/calcindex.html | 2 +- docs/reference/check_gdal.html | 2 +- docs/reference/check_gui_deps.html | 2 +- docs/reference/check_param_list.html | 2 +- docs/reference/check_sen2r_deps.html | 2 +- docs/reference/compute_s2_paths.html | 2 +- docs/reference/comsub.html | 2 +- docs/reference/create_indices_db.html | 2 +- docs/reference/create_s2_dop.html | 2 +- docs/reference/dontuse.html | 2 +- docs/reference/expand_path.html | 2 +- docs/reference/expect_equal_crs.html | 2 +- docs/reference/fix_envi_format.html | 2 +- docs/reference/gdalUtil.html | 2 +- docs/reference/gdal_abs2rel_rel2abs.html | 2 +- docs/reference/gdal_warp.html | 2 +- docs/reference/gdalwarp_grid.html | 2 +- docs/reference/gipp.html | 33 ++++++--- docs/reference/gipp_init.html | 2 +- docs/reference/give_write_permission.html | 2 +- docs/reference/ignorelist.html | 2 +- docs/reference/index.html | 2 +- docs/reference/init_python.html | 2 +- docs/reference/install_aria2.html | 2 +- docs/reference/install_sen2cor.html | 2 +- docs/reference/list_indices.html | 2 +- docs/reference/load_binpaths.html | 5 +- docs/reference/load_extent.html | 2 +- docs/reference/mountpoint.html | 2 +- docs/reference/nn.html | 2 +- docs/reference/normalize_path.html | 2 +- docs/reference/path_check.html | 2 +- docs/reference/print_message.html | 2 +- docs/reference/projpar.html | 2 +- docs/reference/raster2rgb.html | 2 +- docs/reference/raster_metadata.html | 2 +- docs/reference/s2_calcindices.html | 6 +- docs/reference/s2_defNA.html | 2 +- docs/reference/s2_dop.html | 28 +++---- docs/reference/s2_download.html | 2 +- docs/reference/s2_gui.html | 2 +- docs/reference/s2_list.html | 2 +- docs/reference/s2_mask.html | 6 +- docs/reference/s2_merge.html | 2 +- docs/reference/s2_order.html | 68 +++++++++-------- docs/reference/s2_rgb.html | 10 +-- docs/reference/s2_thumbnails.html | 2 +- docs/reference/s2_tiles.html | 6 +- docs/reference/s2_translate.html | 2 +- docs/reference/safe_getMetadata.html | 2 +- docs/reference/safe_is_online.html | 2 +- docs/reference/safe_shortname.html | 2 +- docs/reference/safelist-class.html | 2 +- docs/reference/scihub_login.html | 17 +++-- docs/reference/sen2cor.html | 2 +- docs/reference/sen2r.html | 73 ++++++++++--------- docs/reference/sen2r_getElements.html | 2 +- docs/reference/sen2r_process_report.html | 2 +- docs/reference/smooth_mask.html | 2 +- docs/reference/st_as_text_2.html | 2 +- docs/reference/st_crs2.html | 2 +- docs/reference/stack2rgb.html | 2 +- docs/reference/str_pad2.html | 2 +- docs/reference/suppress_warnings.html | 2 +- docs/reference/tile_utmzone.html | 2 +- docs/reference/tiles_intersects.html | 2 +- docs/reference/trace_function.html | 2 +- man/s2_order.Rd | 6 +- man/scihub_login.Rd | 12 ++- tests/testthat/setup-scihub_creds.R | 29 ++++---- 95 files changed, 297 insertions(+), 252 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 170bdcd7..485c2aef 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: sen2r Type: Package Title: Find, Download and Process Sentinel-2 Data -Version: 1.4.1 +Version: 1.4.2 Authors@R: c(person("Luigi", "Ranghetti", email = "luigi@ranghetti.info", role = c("aut", "cre"), diff --git a/NEWS.md b/NEWS.md index 96402e0a..e0bfbfd4 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,9 @@ +# Version 1.4.2 + +## Bug fixes +- Fix CRAN error (invalid example). + + # Version 1.4.1 ## Minor changes diff --git a/R/s2_order.R b/R/s2_order.R index a93007e9..d76f11d3 100644 --- a/R/s2_order.R +++ b/R/s2_order.R @@ -53,11 +53,11 @@ #' \donttest{ #' # Generate the lists of products #' pos <- sf::st_sfc(sf::st_point(c(-57.8815,-51.6954)), crs = 4326) -#' time_window <- as.Date(c("2018-02-21", "2018-03-20")) +#' time_window <- as.Date(c("2019-10-21", "2019-11-20")) #' list_safe <- s2_list(spatial_extent = pos, time_interval = time_window) #' print(list_safe) -#' # (at the time the documentation was written, this list was containing 5 -#' # archives already available online and 2 stored in the Long Term Archive) +#' # (at the time the documentation was updated, this list was containing 6 +#' # archives already available online and 3 stored in the Long Term Archive) #' #' # Order the products #' ordered_prods <- s2_order(list_safe) diff --git a/R/scihub_login.R b/R/scihub_login.R index c94624bc..68ff6fbe 100644 --- a/R/scihub_login.R +++ b/R/scihub_login.R @@ -24,10 +24,14 @@ #' @note License: GPL 3.0 #' #' @examples -#' check_scihub_login("user", "user") -#' write_scihub_login("user", "user") -#' read_scihub_login() -#' check_scihub_connection() +#' \donttest{ +#' check_scihub_connection() +#' } +#' \dontrun{ +#' check_scihub_login("username", "password") +#' write_scihub_login("username", "password") +#' read_scihub_login() +#' } #' @name read_scihub_login #' @rdname scihub_login diff --git a/cran-comments.md b/cran-comments.md index 55d6307c..5b68362c 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,4 +1,4 @@ -# sen2r v. 1.4.1 +# sen2r v. 1.4.2 ## Test environments * [local installation] Ubuntu 18.04, 64 bit, R 4.0.4 @@ -7,21 +7,19 @@ * [win-builder] R unstable, 4.0.4 and 3.6.3 (devel, release and oldrelease) ## R CMD check results -There were no ERRORs, WARNINGs or NOTEs. +There were no ERRORs nor WARNINGs. +There was 1 NOTE: +Days since last update: 2 + +This submission is finalised to fix an error found by CRAN checks +on the last release submitted 2 days ago (see below). ## CRAN review > Dear maintainer, Please see the problems shown on . -Please correct before 2021-03-11 to safely retain your package on CRAN. - -All the errors were fixed (they were due to #390) -(see commit 82754724fd3259b12ea1aee57a5242cfcec8438d). - -> 'Writing R Extensions' asked you not to use progress bars in -non-interactive sessions and doing so makes your erroneous output -necessarily hard to read. +Please correct before 2021-03-18 to safely retain your package on CRAN. -All progress bars were put within `if (interactive())` checks -(see commit c4f36378859d584d9c617ccdd3938d4086a05816). +The error were fixed +(see commit 6010b3f327f3c71392e47c2adc12071f50c29ee7). diff --git a/docs/404.html b/docs/404.html index b2ce4b28..710b6063 100644 --- a/docs/404.html +++ b/docs/404.html @@ -71,7 +71,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/CODE-OF-CONDUCT.html b/docs/CODE-OF-CONDUCT.html index b7c22bc1..bbde6719 100644 --- a/docs/CODE-OF-CONDUCT.html +++ b/docs/CODE-OF-CONDUCT.html @@ -71,7 +71,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/ISSUE_TEMPLATE.html b/docs/ISSUE_TEMPLATE.html index ee387fb9..28b80a70 100644 --- a/docs/ISSUE_TEMPLATE.html +++ b/docs/ISSUE_TEMPLATE.html @@ -71,7 +71,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/LICENSE.html b/docs/LICENSE.html index 61e1444b..22cf531f 100644 --- a/docs/LICENSE.html +++ b/docs/LICENSE.html @@ -71,7 +71,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/articles/docker.html b/docs/articles/docker.html index e1a8947f..0be4bd5b 100644 --- a/docs/articles/docker.html +++ b/docs/articles/docker.html @@ -31,7 +31,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/articles/index.html b/docs/articles/index.html index 77f0a006..a88f71bb 100644 --- a/docs/articles/index.html +++ b/docs/articles/index.html @@ -71,7 +71,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/articles/installation.html b/docs/articles/installation.html index de5b094b..be6529a3 100644 --- a/docs/articles/installation.html +++ b/docs/articles/installation.html @@ -31,7 +31,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/articles/outstructure.html b/docs/articles/outstructure.html index 619341f6..3bc3adb6 100644 --- a/docs/articles/outstructure.html +++ b/docs/articles/outstructure.html @@ -31,7 +31,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/articles/sen2r_cmd.html b/docs/articles/sen2r_cmd.html index 344b5320..c034de7e 100644 --- a/docs/articles/sen2r_cmd.html +++ b/docs/articles/sen2r_cmd.html @@ -31,7 +31,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/articles/sen2r_gui.html b/docs/articles/sen2r_gui.html index 5859cbd8..bcfbf645 100644 --- a/docs/articles/sen2r_gui.html +++ b/docs/articles/sen2r_gui.html @@ -31,7 +31,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/authors.html b/docs/authors.html index a6987726..2e78cfcf 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -71,7 +71,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/index.html b/docs/index.html index 4ad6fe5a..a993b37e 100644 --- a/docs/index.html +++ b/docs/index.html @@ -38,7 +38,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/news/index.html b/docs/news/index.html index 6242b9a9..f0ddf56e 100644 --- a/docs/news/index.html +++ b/docs/news/index.html @@ -71,7 +71,7 @@ sen2r - 1.4.1 + 1.4.2 @@ -155,9 +155,21 @@

Changelog

Source: NEWS.md +
+

+Version 1.4.2 Unreleased +

+
+

+Bug fixes

+
    +
  • Fix CRAN error (invalid example).
    • +
+
+

-Version 1.4.1 Unreleased +Version 1.4.1 2021-03-02

@@ -169,9 +181,9 @@

  • Manage error 429 for dhus (resend APIs more times in case of too many requests).

    • -
    +

    -Bug fixes

    +Bug fixes
    • Partially fix #368 (determine the output projection before processing).
    • Fix #371.
      • @@ -227,9 +239,9 @@

      Version 1.3.9 2020-10-14

      -
      +

      -Bug fixes

      +Bug fixes
      • Fix check errors due to rgdal changes in version 1.6-17.
      @@ -257,9 +269,9 @@

      build_example_param_file() now generates more recent images, 2020-08-01 instead than 2019-07-23 (this because the previous ones required two SAFE which are now on LTA); the same was done for some tests.

    -
    +

    -Bug fixes

    +Bug fixes @@ -294,9 +306,9 @@

  • The documentation site links to the personal page https://luigi.ranghetti.info/.

    • -
    +

    -Bug fixes

    +Bug fixes @@ -306,9 +318,9 @@

    Version 1.3.6 2020-06-04

    -
    +

    -Bug fixes

    +Bug fixes
    • Fix GDAL usage over Windows (a new version was specifically released for this bug because it caused sen2r stopping for many Windows users).
    @@ -342,9 +354,9 @@

  • Update documentation according to GDAL changes.

    • -
    +

    -Bug fixes

    +Bug fixes
    • Fix Travis-lwgeom incompatibilities (#319)
    • Fix #310 and #311
      • @@ -387,9 +399,9 @@

    • The new section of the vignette “Output file documentation” regarding products is linked in the GUI.

    -
    +

    -Bug fixes

    +Bug fixes
    • Re-fix #292.
    • Fix #308.
      • @@ -427,9 +439,9 @@

    • Improve the installation page.

    -
    +

    -Bug fixes

    +Bug fixes
    • Support for sf >= 0.9 (#260)
    • Patch for stars issue, made to resolve the temporary incompatibility with sf >= 0.9 (see issue #295)
      • @@ -489,9 +501,9 @@

    • Documentation was improved with three new vignettes about GUI usage, command line usage and output structure.

    -
    +

    -Bug fixes

    +Bug fixes
    • Restore checking environmental variable in init_python() (this urgent bug fixing was the reason of the urgent release of the current version).
    • Fix building offline footprint.
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--git a/docs/reference/abs2rel.html b/docs/reference/abs2rel.html index 49fa128b..f95f8709 100644 --- a/docs/reference/abs2rel.html +++ b/docs/reference/abs2rel.html @@ -75,7 +75,7 @@ sen2r - 1.4.1 + 1.4.2
    diff --git a/docs/reference/add_rgb_image.html b/docs/reference/add_rgb_image.html index a8ca6f1f..62e36654 100644 --- a/docs/reference/add_rgb_image.html +++ b/docs/reference/add_rgb_image.html @@ -72,7 +72,7 @@ sen2r - 1.4.1 + 1.4.2
    diff --git a/docs/reference/add_tile_suffix.html b/docs/reference/add_tile_suffix.html index 69242706..b439b79c 100644 --- a/docs/reference/add_tile_suffix.html +++ b/docs/reference/add_tile_suffix.html @@ -76,7 +76,7 @@ sen2r - 1.4.1 + 1.4.2
    diff --git a/docs/reference/build_example_param_file.html b/docs/reference/build_example_param_file.html index 94d60ad6..25f1da89 100644 --- a/docs/reference/build_example_param_file.html +++ b/docs/reference/build_example_param_file.html @@ -74,7 +74,7 @@ sen2r - 1.4.1 + 1.4.2
    @@ -204,7 +204,7 @@

    AuthorExamples

    build_example_param_file()
-
    #> [1] "/tmp/Rtmpb6Zc1m/file32e15c576e3224_sen2r_params.json"
    +
    #> [1] "/tmp/RtmpV9ekAl/file5b0a192fb1c9_sen2r_params.json"
    diff --git a/docs/reference/check_gdal.html b/docs/reference/check_gdal.html index c4d8a9fe..d348c972 100644 --- a/docs/reference/check_gdal.html +++ b/docs/reference/check_gdal.html @@ -73,7 +73,7 @@ sen2r - 1.4.1 + 1.4.2
    diff --git a/docs/reference/check_gui_deps.html b/docs/reference/check_gui_deps.html index 916632c1..02045b21 100644 --- a/docs/reference/check_gui_deps.html +++ b/docs/reference/check_gui_deps.html @@ -73,7 +73,7 @@ sen2r - 1.4.1 + 1.4.2
    diff --git a/docs/reference/check_param_list.html b/docs/reference/check_param_list.html index 14f05b40..fbe2a528 100644 --- a/docs/reference/check_param_list.html +++ b/docs/reference/check_param_list.html @@ -74,7 +74,7 @@ sen2r - 1.4.1 + 1.4.2
    diff --git a/docs/reference/check_sen2r_deps.html b/docs/reference/check_sen2r_deps.html index 7e6c30d9..85a0d011 100644 --- a/docs/reference/check_sen2r_deps.html +++ b/docs/reference/check_sen2r_deps.html @@ -73,7 +73,7 @@ sen2r - 1.4.1 + 1.4.2
    diff --git a/docs/reference/compute_s2_paths.html b/docs/reference/compute_s2_paths.html index 2b6a070a..fecd2940 100644 --- a/docs/reference/compute_s2_paths.html +++ b/docs/reference/compute_s2_paths.html @@ -81,7 +81,7 @@ sen2r - 1.4.1 + 1.4.2
    diff --git a/docs/reference/comsub.html b/docs/reference/comsub.html index 4929ee32..8790c02f 100644 --- a/docs/reference/comsub.html +++ b/docs/reference/comsub.html @@ -73,7 +73,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/reference/create_indices_db.html b/docs/reference/create_indices_db.html index e954687c..e8033138 100644 --- a/docs/reference/create_indices_db.html +++ b/docs/reference/create_indices_db.html @@ -78,7 +78,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/reference/create_s2_dop.html b/docs/reference/create_s2_dop.html index 1ce10e1b..8a82ef7c 100644 --- a/docs/reference/create_s2_dop.html +++ b/docs/reference/create_s2_dop.html @@ -73,7 +73,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/reference/dontuse.html b/docs/reference/dontuse.html index 2a707358..68038e0c 100644 --- a/docs/reference/dontuse.html +++ b/docs/reference/dontuse.html @@ -72,7 +72,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/reference/expand_path.html b/docs/reference/expand_path.html index c0b6bbb1..1cfe553b 100644 --- a/docs/reference/expand_path.html +++ b/docs/reference/expand_path.html @@ -77,7 +77,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/reference/expect_equal_crs.html b/docs/reference/expect_equal_crs.html index a48669de..578688d5 100644 --- a/docs/reference/expect_equal_crs.html +++ b/docs/reference/expect_equal_crs.html @@ -73,7 +73,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/reference/fix_envi_format.html b/docs/reference/fix_envi_format.html index d32bdb90..639b22fb 100644 --- a/docs/reference/fix_envi_format.html +++ b/docs/reference/fix_envi_format.html @@ -81,7 +81,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/reference/gdalUtil.html b/docs/reference/gdalUtil.html index abc8b4b7..abfb4351 100644 --- a/docs/reference/gdalUtil.html +++ b/docs/reference/gdalUtil.html @@ -76,7 +76,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/reference/gdal_abs2rel_rel2abs.html b/docs/reference/gdal_abs2rel_rel2abs.html index b10f9d62..651b2383 100644 --- a/docs/reference/gdal_abs2rel_rel2abs.html +++ b/docs/reference/gdal_abs2rel_rel2abs.html @@ -81,7 +81,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/reference/gdal_warp.html b/docs/reference/gdal_warp.html index aa7a79c8..46f97d1b 100644 --- a/docs/reference/gdal_warp.html +++ b/docs/reference/gdal_warp.html @@ -75,7 +75,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/reference/gdalwarp_grid.html b/docs/reference/gdalwarp_grid.html index d481302e..0c65e08f 100644 --- a/docs/reference/gdalwarp_grid.html +++ b/docs/reference/gdalwarp_grid.html @@ -75,7 +75,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/reference/gipp.html b/docs/reference/gipp.html index fa548f62..46b4b479 100644 --- a/docs/reference/gipp.html +++ b/docs/reference/gipp.html @@ -75,7 +75,7 @@ sen2r - 1.4.1 + 1.4.2 @@ -232,26 +232,35 @@

    Examp 
    # \donttest{
 # Read default values
 read_gipp(c("dem_directory", "dem_reference"))
-
    #> Error: 
-#> Sen2Cor was not yet installed; install it using function
-#> install_sen2cor() (command line) or check_sen2r_deps() (GUI).
    # Set the use of a topographic correction
+
    #> $dem_directory
+#> [1] "NONE"
+#> 
+#> $dem_reference
+#> [1] "http://data_public:GDdci@data.cgiar-csi.org/srtm/tiles/GeoTIFF/"
+#> 
    # Set the use of a topographic correction
 set_gipp(use_dem = TRUE, gipp_path = gipp_temp <- tempfile())
-
    #> Error: 
-#> Sen2Cor was not yet installed; install it using function
-#> install_sen2cor() (command line) or check_sen2r_deps() (GUI).
    # Read the parameters in the created temporary files
+# Read the parameters in the created temporary files
 read_gipp(c("DEM_Directory", "DEM_Reference"), gipp_path = gipp_temp)
-
    #> Error in normalizePath(path, ...): path[1]="/tmp/Rtmpb6Zc1m/file32e15ca2f8e69": File o directory non esistente
    # Set not to use a topographic correction
+
    #> $DEM_Directory
+#> [1] "/home/lranghetti/.sen2r/srtm90"
+#> 
+#> $DEM_Reference
+#> [1] "http://data_public:GDdci@data.cgiar-csi.org/srtm/tiles/GeoTIFF/"
+#> 
    # Set not to use a topographic correction
 set_gipp(use_dem = FALSE, gipp_path = gipp_temp <- tempfile())
-
    #> Error: 
-#> Sen2Cor was not yet installed; install it using function
-#> install_sen2cor() (command line) or check_sen2r_deps() (GUI).
    # This is equivalent to:
+# This is equivalent to:
 # set_gipp(
 #   list(DEM_Directory = NA, DEM_Reference = NA), 
 #   gipp_path = gipp_temp <- tempfile()
 # )
 # Read again the parameters in the created temporary files
 read_gipp(c("DEM_Directory", "DEM_Reference"), gipp_path = gipp_temp)
-
    #> Error in normalizePath(path, ...): path[1]="/tmp/Rtmpb6Zc1m/file32e15c7f0bdd09": File o directory non esistente
    # }
+
    #> $DEM_Directory
+#> [1] "NONE"
+#> 
+#> $DEM_Reference
+#> [1] "http://data_public:GDdci@data.cgiar-csi.org/srtm/tiles/GeoTIFF/"
+#> 
    # }
    diff --git a/docs/reference/give_write_permission.html b/docs/reference/give_write_permission.html index b22a2c96..61ca2e1b 100644 --- a/docs/reference/give_write_permission.html +++ b/docs/reference/give_write_permission.html @@ -76,7 +76,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/reference/ignorelist.html b/docs/reference/ignorelist.html index 50f36795..63c3db7f 100644 --- a/docs/reference/ignorelist.html +++ b/docs/reference/ignorelist.html @@ -74,7 +74,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/reference/index.html b/docs/reference/index.html index a466bc50..6e7dbd6d 100644 --- a/docs/reference/index.html +++ b/docs/reference/index.html @@ -71,7 +71,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/reference/init_python.html b/docs/reference/init_python.html index bb508aed..ea2d55ee 100644 --- a/docs/reference/init_python.html +++ b/docs/reference/init_python.html @@ -73,7 +73,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/reference/install_aria2.html b/docs/reference/install_aria2.html index df201c84..c633a676 100644 --- a/docs/reference/install_aria2.html +++ b/docs/reference/install_aria2.html @@ -73,7 +73,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/reference/install_sen2cor.html b/docs/reference/install_sen2cor.html index 68fc6944..b7d8f965 100644 --- a/docs/reference/install_sen2cor.html +++ b/docs/reference/install_sen2cor.html @@ -75,7 +75,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/reference/list_indices.html b/docs/reference/list_indices.html index 031de4f2..0590c2fc 100644 --- a/docs/reference/list_indices.html +++ b/docs/reference/list_indices.html @@ -73,7 +73,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/reference/load_binpaths.html b/docs/reference/load_binpaths.html index c015e630..a5e56dd3 100644 --- a/docs/reference/load_binpaths.html +++ b/docs/reference/load_binpaths.html @@ -73,7 +73,7 @@ sen2r - 1.4.1 + 1.4.2 @@ -211,6 +211,9 @@

    Examp #> $aria2c #> [1] "/usr/bin/aria2c" #> +#> $sen2cor +#> [1] "/home/lranghetti/.sen2r/sen2cor/bin/L2A_Process" +#> #> attr(,"path") #> [1] "/home/lranghetti/.sen2r/paths.json"
    # } diff --git a/docs/reference/load_extent.html b/docs/reference/load_extent.html index 763dba3f..7b6e1b75 100644 --- a/docs/reference/load_extent.html +++ b/docs/reference/load_extent.html @@ -73,7 +73,7 @@ sen2r - 1.4.1 + 1.4.2
    diff --git a/docs/reference/mountpoint.html b/docs/reference/mountpoint.html index e95e7eb7..879272e4 100644 --- a/docs/reference/mountpoint.html +++ b/docs/reference/mountpoint.html @@ -74,7 +74,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/reference/nn.html b/docs/reference/nn.html index b669c75a..af95abe1 100644 --- a/docs/reference/nn.html +++ b/docs/reference/nn.html @@ -73,7 +73,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/reference/normalize_path.html b/docs/reference/normalize_path.html index 93c0a1d3..539acebd 100644 --- a/docs/reference/normalize_path.html +++ b/docs/reference/normalize_path.html @@ -73,7 +73,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/reference/path_check.html b/docs/reference/path_check.html index 9ee79792..4ca79fe6 100644 --- a/docs/reference/path_check.html +++ b/docs/reference/path_check.html @@ -73,7 +73,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/reference/print_message.html b/docs/reference/print_message.html index 1626e031..3923c8eb 100644 --- a/docs/reference/print_message.html +++ b/docs/reference/print_message.html @@ -72,7 +72,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/reference/projpar.html b/docs/reference/projpar.html index 2d22e2b2..a4a947f8 100644 --- a/docs/reference/projpar.html +++ b/docs/reference/projpar.html @@ -73,7 +73,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/reference/raster2rgb.html b/docs/reference/raster2rgb.html index fa85485a..d7f11fc7 100644 --- a/docs/reference/raster2rgb.html +++ b/docs/reference/raster2rgb.html @@ -74,7 +74,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/reference/raster_metadata.html b/docs/reference/raster_metadata.html index 77d8ac6a..8e126925 100644 --- a/docs/reference/raster_metadata.html +++ b/docs/reference/raster_metadata.html @@ -73,7 +73,7 @@ sen2r - 1.4.1 + 1.4.2 diff --git a/docs/reference/s2_calcindices.html b/docs/reference/s2_calcindices.html index c2080057..eee7db80 100644 --- a/docs/reference/s2_calcindices.html +++ b/docs/reference/s2_calcindices.html @@ -74,7 +74,7 @@ sen2r - 1.4.1 + 1.4.2 @@ -349,8 +349,8 @@

    Examp outdir = tempdir(), dataType = "Float32" ) -
    #> Carico il pacchetto richiesto: sp
    #> Carico il pacchetto richiesto: abind
    #> Carico il pacchetto richiesto: sf
    #> Linking to GEOS 3.8.1, GDAL 3.0.4, PROJ 6.3.2
    #> [2021-03-02 08:33:00] Computing index EVI on date 2019-07-23...
    ex_out -
    #> [1] "/tmp/Rtmpb6Zc1m/S2A2A_20190723_022_Barbellino_EVI_10.tif"
    +
    #> Carico il pacchetto richiesto: sp
    #> Carico il pacchetto richiesto: abind
    #> Carico il pacchetto richiesto: sf
    #> Linking to GEOS 3.8.1, GDAL 3.0.4, PROJ 6.3.2
    #> [2021-03-04 09:19:22] Computing index EVI on date 2019-07-23...
    ex_out +
    #> [1] "/tmp/RtmpV9ekAl/S2A2A_20190723_022_Barbellino_EVI_10.tif"
    # Show output oldpar <- par(mfrow = c(1,2), mar = rep(0,4)) image(stars::read_stars(ex_in), rgb = 4:2, maxColorValue = 3500, useRaster = TRUE) diff --git a/docs/reference/s2_defNA.html b/docs/reference/s2_defNA.html index 6151ceba..3acc0d00 100644 --- a/docs/reference/s2_defNA.html +++ b/docs/reference/s2_defNA.html @@ -74,7 +74,7 @@ sen2r - 1.4.1 + 1.4.2
    diff --git a/docs/reference/s2_dop.html b/docs/reference/s2_dop.html index 3c2de0d5..2e589574 100644 --- a/docs/reference/s2_dop.html +++ b/docs/reference/s2_dop.html @@ -81,7 +81,7 @@ sen2r - 1.4.1 + 1.4.2 @@ -232,17 +232,17 @@

    Examp 
    # All the passages in a cycle of 10 days over all the orbits
 s2_dop()
 
    #>            date mission orbit
-#>   1: 2021-03-02      2A   001
-#>   2: 2021-03-02      2A   131
-#>   3: 2021-03-02      2A   132
-#>   4: 2021-03-02      2A   133
-#>   5: 2021-03-02      2A   134
+#>   1: 2021-03-04      2A   016
+#>   2: 2021-03-04      2A   017
+#>   3: 2021-03-04      2A   018
+#>   4: 2021-03-04      2A   019
+#>   5: 2021-03-04      2A   020
 #>  ---                         
-#> 282: 2021-03-11      2B   054
-#> 283: 2021-03-11      2B   055
-#> 284: 2021-03-11      2B   056
-#> 285: 2021-03-11      2B   057
-#> 286: 2021-03-11      2B   058
    
+#> 282: 2021-03-13      2B   083
+#> 283: 2021-03-13      2B   084
+#> 284: 2021-03-13      2B   085
+#> 285: 2021-03-13      2B   086
+#> 286: 2021-03-13      2B   087
    
 # The passages in the current month over two orbits
 s2_dop(c("022", "065"), "this month")
 
    #>           date mission orbit
@@ -263,11 +263,11 @@ 
    Examp
 
    #> [1] "2021-03-04" "2021-03-14" "2021-03-24" "2021-04-03"
    
 # The date in which Sentinel-2A would be passed in the last 10 days over one orbit
 s2_dop("022", "-10 days", mission = "2A")$date
-
    #> [1] "2021-02-22"
    
+
    #> [1] "2021-03-04"
    
 # All the orbits covered today
 s2_dop(timewindow = Sys.Date(), mission = "2B")$orbit
-
    #>  [1] "059" "060" "061" "062" "063" "064" "065" "066" "067" "068" "069" "070"
-#> [13] "071" "072"
    
+
    #>  [1] "088" "089" "090" "091" "092" "093" "094" "095" "096" "097" "098" "099"
+#> [13] "100" "101"
    
 # The passages in a fixed time window for one orbit
 s2_dop(65, as.Date(c("2018-08-01", "2018-08-31")))
 
    #>          date mission orbit
diff --git a/docs/reference/s2_download.html b/docs/reference/s2_download.html
index a4cc4b31..06b17dae 100644
--- a/docs/reference/s2_download.html
+++ b/docs/reference/s2_download.html
@@ -75,7 +75,7 @@
       
       
         sen2r
-        1.4.1
+        1.4.2
       
     
    
 
diff --git a/docs/reference/s2_gui.html b/docs/reference/s2_gui.html
index 58a509bf..17f04f93 100644
--- a/docs/reference/s2_gui.html
+++ b/docs/reference/s2_gui.html
@@ -73,7 +73,7 @@
       
       
         sen2r
-        1.4.1
+        1.4.2
       
     
 
diff --git a/docs/reference/s2_list.html b/docs/reference/s2_list.html
index 300f09c3..1b04964b 100644
--- a/docs/reference/s2_list.html
+++ b/docs/reference/s2_list.html
@@ -73,7 +73,7 @@
       
       
         sen2r
-        1.4.1
+        1.4.2
       
     
 
diff --git a/docs/reference/s2_mask.html b/docs/reference/s2_mask.html
index 6499c97d..6be76281 100644
--- a/docs/reference/s2_mask.html
+++ b/docs/reference/s2_mask.html
@@ -77,7 +77,7 @@
       
       
         sen2r
-        1.4.1
+        1.4.2
       
     
 
@@ -409,9 +409,9 @@ 
    Examp
   mask_type = "land",
   outdir = tempdir()
 )
-
    #> [2021-03-02 08:33:16] Masking file
+
    #> [2021-03-04 09:19:34] Masking file
 #>        S2A2A_20190723_022_Barbellino_RGB432B_10.tif...
    ex_out
-
    #> [1] "/tmp/Rtmpb6Zc1m/S2A2A_20190723_022_Barbellino_RGB432B_10.tif"
+
    #> [1] "/tmp/RtmpV9ekAl/S2A2A_20190723_022_Barbellino_RGB432B_10.tif"
 #> attr(,"toomasked")
 #> character(0)
    
 # Show output
diff --git a/docs/reference/s2_merge.html b/docs/reference/s2_merge.html
index 3f0acafe..0779b8cf 100644
--- a/docs/reference/s2_merge.html
+++ b/docs/reference/s2_merge.html
@@ -75,7 +75,7 @@
       
       
         sen2r
-        1.4.1
+        1.4.2
       
     
    
 
diff --git a/docs/reference/s2_order.html b/docs/reference/s2_order.html
index 255789ce..f7739e1d 100644
--- a/docs/reference/s2_order.html
+++ b/docs/reference/s2_order.html
@@ -73,7 +73,7 @@
       
       
         sen2r
-        1.4.1
+        1.4.2
       
     
 
@@ -253,48 +253,52 @@ 
    Examp
     
    # \donttest{
 # Generate the lists of products
 pos <- sf::st_sfc(sf::st_point(c(-57.8815,-51.6954)), crs = 4326)
-time_window <- as.Date(c("2018-02-21", "2018-03-20"))
+time_window <- as.Date(c("2019-10-21", "2019-11-20"))
 list_safe <- s2_list(spatial_extent = pos, time_interval = time_window)
 
    #> although coordinates are longitude/latitude, st_union assumes that they are planar
    print(list_safe)
-
    #> A named vector with 7 SAFE archives.
-#>                                      S2B_MSIL1C_20180224T133629_N0206_R038_T21FVC_20180224T194845.SAFE 
-#> "https://scihub.copernicus.eu/apihub/odata/v1/Products('c88086ac-8087-4adb-866e-baeffec5eb68')/$value" 
-#>                                      S2B_MSIL1C_20180227T134629_N0206_R081_T21FVC_20180227T200327.SAFE 
-#> "https://scihub.copernicus.eu/apihub/odata/v1/Products('fa8cba66-7b8b-45aa-9038-9521d7658bad')/$value" 
-#>                                      S2A_MSIL1C_20180301T133641_N0206_R038_T21FVC_20180301T145524.SAFE 
-#> "https://scihub.copernicus.eu/apihub/odata/v1/Products('d9a50ba4-8213-421e-92da-e5a487766dc2')/$value" 
-#>                                      S2B_MSIL1C_20180306T133629_N0206_R038_T21FVC_20180306T183210.SAFE 
-#> "https://scihub.copernicus.eu/apihub/odata/v1/Products('5ae358f2-8589-493b-bb6d-09df04ec0ff9')/$value" 
-#>                                      S2A_MSIL1C_20180311T133641_N0206_R038_T21FVC_20180311T163528.SAFE 
-#> "https://scihub.copernicus.eu/apihub/odata/v1/Products('266e369c-9ab5-486e-83b3-7180b6956616')/$value" 
-#> ...with 2 more elements.
-#> The following attributes are included: mission, level, id_tile, id_orbit, sensing_datetime, ingestion_datetime, clouds, footprint, uuid, online.
    # (at the time the documentation was written, this list was containing 5
-# archives already available online and 2 stored in the Long Term Archive)
+
    #> A named vector with 9 SAFE archives.
+#>                                      S2A_MSIL2A_20191022T133641_N0213_R038_T21FVC_20191023T155120.SAFE 
+#> "https://scihub.copernicus.eu/apihub/odata/v1/Products('d76c8a00-3b7f-45a2-b359-fc363c388a94')/$value" 
+#>                                      S2B_MSIL2A_20191027T133639_N0213_R038_T21FVC_20191027T150854.SAFE 
+#> "https://scihub.copernicus.eu/apihub/odata/v1/Products('03cb6cbc-e858-4e40-ae37-d1872c957762')/$value" 
+#>                                      S2B_MSIL2A_20191030T134639_N0213_R081_T21FVC_20191030T152504.SAFE 
+#> "https://scihub.copernicus.eu/apihub/odata/v1/Products('ed6aeeb1-f721-4aed-9a85-b37708f7149d')/$value" 
+#>                                      S2A_MSIL2A_20191101T133641_N0213_R038_T21FVC_20191101T150755.SAFE 
+#> "https://scihub.copernicus.eu/apihub/odata/v1/Products('a52c1f7b-aa21-4055-9541-95aa2ec28bdb')/$value" 
+#>                                      S2B_MSIL2A_20191106T133639_N0213_R038_T21FVC_20191106T150814.SAFE 
+#> "https://scihub.copernicus.eu/apihub/odata/v1/Products('091bc063-4978-4b28-8664-c5189d71e64b')/$value" 
+#> ...with 4 more elements.
+#> The following attributes are included: mission, level, id_tile, id_orbit, sensing_datetime, ingestion_datetime, clouds, footprint, uuid, online.
    # (at the time the documentation was updated, this list was containing 6
+# archives already available online and 3 stored in the Long Term Archive)
 
 # Order the products
 ordered_prods <- s2_order(list_safe)
-
    #> [2021-03-02 08:33:39] Check if products are already available for
-#>        download...
    #> [2021-03-02 08:33:40] Ordering 7 Sentinel-2 images stored in the Long
-#>        Term Archive...
    #> [2021-03-02 08:33:46] 7 of 7 Sentinel-2 images were correctly ordered.
+
    #> [2021-03-04 09:32:47] Check if products are already available for
+#>        download...
    #> [2021-03-04 09:32:48] 6 Sentinel-2 images are already online.
    #> [2021-03-04 09:32:48] Ordering 3 Sentinel-2 images stored in the Long
+#>        Term Archive...
    #> [2021-03-04 09:32:52] 3 of 3 Sentinel-2 images were correctly ordered.
 #>        You can check at a later time if the ordered products are
 #>        available online using the command:
-#>   safe_is_online("/home/lranghetti/.sen2r/lta_orders/lta_20210302_083346.json")
    
+#>   safe_is_online("/home/lranghetti/.sen2r/lta_orders/lta_20210304_093252.json")
    
 # Check in a second time if the product was made available
 (order_path <- attr(ordered_prods, "path"))
-
    #> [1] "/home/lranghetti/.sen2r/lta_orders/lta_20210302_083346.json"
    safe_is_online(order_path)
-
    #> 0 out of 7 products are online.
    #> S2B_MSIL1C_20180224T133629_N0206_R038_T21FVC_20180224T194845.SAFE 
+
    #> [1] "/home/lranghetti/.sen2r/lta_orders/lta_20210304_093252.json"
    safe_is_online(order_path)
+
    #> 6 out of 9 products are online.
    #> S2A_MSIL2A_20191101T133641_N0213_R038_T21FVC_20191101T150755.SAFE 
+#>                                                              TRUE 
+#> S2B_MSIL2A_20191106T133639_N0213_R038_T21FVC_20191106T150814.SAFE 
+#>                                                              TRUE 
+#> S2B_MSIL2A_20191109T134639_N0213_R081_T21FVC_20191109T152703.SAFE 
+#>                                                              TRUE 
+#> S2A_MSIL2A_20191111T133641_N0213_R038_T21FVC_20191111T150452.SAFE 
+#>                                                              TRUE 
+#> S2B_MSIL2A_20191116T133639_N0213_R038_T21FVC_20191116T145355.SAFE 
+#>                                                              TRUE 
+#> S2B_MSIL2A_20191119T134639_N0213_R081_T21FVC_20191119T152133.SAFE 
+#>                                                              TRUE 
+#> S2A_MSIL2A_20191022T133641_N0213_R038_T21FVC_20191023T155120.SAFE 
 #>                                                             FALSE 
-#> S2B_MSIL1C_20180227T134629_N0206_R081_T21FVC_20180227T200327.SAFE 
+#> S2B_MSIL2A_20191027T133639_N0213_R038_T21FVC_20191027T150854.SAFE 
 #>                                                             FALSE 
-#> S2A_MSIL1C_20180301T133641_N0206_R038_T21FVC_20180301T145524.SAFE 
-#>                                                             FALSE 
-#> S2B_MSIL1C_20180306T133629_N0206_R038_T21FVC_20180306T183210.SAFE 
-#>                                                             FALSE 
-#> S2A_MSIL1C_20180311T133641_N0206_R038_T21FVC_20180311T163528.SAFE 
-#>                                                             FALSE 
-#> S2A_MSIL1C_20180314T134631_N0206_R081_T21FVC_20180314T150724.SAFE 
-#>                                                             FALSE 
-#> S2B_MSIL1C_20180316T133639_N0206_R038_T21FVC_20180316T145348.SAFE 
+#> S2B_MSIL2A_20191030T134639_N0213_R081_T21FVC_20191030T152504.SAFE 
 #>                                                             FALSE 
    # }
 
    
   
diff --git a/docs/reference/s2_rgb.html b/docs/reference/s2_rgb.html
index 22fddedb..2d4e51f2 100644
--- a/docs/reference/s2_rgb.html
+++ b/docs/reference/s2_rgb.html
@@ -72,7 +72,7 @@
       
       
         sen2r
-        1.4.1
+        1.4.2
       
     
 
@@ -326,11 +326,11 @@ 
    Examp
   outdir = tempdir(),
   compress = 50
 )
-
    #> [2021-03-02 08:33:48] Generating image
-#>        S2A2A_20190723_022_Barbellino_RGBb84B_10.tif...
    #> [2021-03-02 08:33:54] Generating image
+
    #> [2021-03-04 09:20:09] Generating image
+#>        S2A2A_20190723_022_Barbellino_RGBb84B_10.tif...
    #> [2021-03-04 09:20:14] Generating image
 #>        S2A2A_20190723_022_Barbellino_RGB954B_10.tif...
    #> 2 output RGB files were correctly created.
    ex_out
-
    #> [1] "/tmp/Rtmpb6Zc1m/RGBb84B/S2A2A_20190723_022_Barbellino_RGBb84B_10.tif"
-#> [2] "/tmp/Rtmpb6Zc1m/RGB954B/S2A2A_20190723_022_Barbellino_RGB954B_10.tif"
    
+
    #> [1] "/tmp/RtmpV9ekAl/RGBb84B/S2A2A_20190723_022_Barbellino_RGBb84B_10.tif"
+#> [2] "/tmp/RtmpV9ekAl/RGB954B/S2A2A_20190723_022_Barbellino_RGB954B_10.tif"
    
 # Show output
 oldpar <- par(mfrow = c(1,3), mar = rep(0,4))
 image(stars::read_stars(ex_in), rgb = 4:2, maxColorValue = 3500, useRaster = TRUE)
diff --git a/docs/reference/s2_thumbnails.html b/docs/reference/s2_thumbnails.html
index 2204823b..7df81492 100644
--- a/docs/reference/s2_thumbnails.html
+++ b/docs/reference/s2_thumbnails.html
@@ -77,7 +77,7 @@
       
       
         sen2r
-        1.4.1
+        1.4.2
       
     
    
 
diff --git a/docs/reference/s2_tiles.html b/docs/reference/s2_tiles.html
index 9a21f4ab..3f403d76 100644
--- a/docs/reference/s2_tiles.html
+++ b/docs/reference/s2_tiles.html
@@ -74,7 +74,7 @@
       
       
         sen2r
-        1.4.1
+        1.4.2
       
     
 
@@ -195,11 +195,11 @@ 
    Examp
   httr::write_disk(ch_path <- tempfile())
 )
 
    #> Response [https://raw.githubusercontent.com/ranghetti/sen2r/master/utils/vector/ch_bound.rds]
-#>   Date: 2021-03-02 07:38
+#>   Date: 2021-03-04 08:25
 #>   Status: 200
 #>   Content-Type: application/octet-stream
 #>   Size: 43.8 kB
-#> <ON DISK>  /tmp/Rtmpb6Zc1m/file32e15c4254a364
    ch <- readRDS(ch_path)
+#> <ON DISK>  /tmp/RtmpV9ekAl/file5b0a6011fd9c
    ch <- readRDS(ch_path)
 s2tiles_ch <- s2tiles[suppressMessages(sf::st_intersects(ch, s2tiles))[[1]],]
 s2_coords <- sf::st_coordinates(suppressWarnings(sf::st_centroid(s2tiles_ch)))
 
diff --git a/docs/reference/s2_translate.html b/docs/reference/s2_translate.html
index 9daac048..6ae19e41 100644
--- a/docs/reference/s2_translate.html
+++ b/docs/reference/s2_translate.html
@@ -75,7 +75,7 @@
       
       
         sen2r
-        1.4.1
+        1.4.2
       
     
    
 
diff --git a/docs/reference/safe_getMetadata.html b/docs/reference/safe_getMetadata.html
index 8771ced4..119fdf2a 100644
--- a/docs/reference/safe_getMetadata.html
+++ b/docs/reference/safe_getMetadata.html
@@ -77,7 +77,7 @@
       
       
         sen2r
-        1.4.1
+        1.4.2
       
     
 
diff --git a/docs/reference/safe_is_online.html b/docs/reference/safe_is_online.html
index 87a61a34..ce5e57cd 100644
--- a/docs/reference/safe_is_online.html
+++ b/docs/reference/safe_is_online.html
@@ -74,7 +74,7 @@
       
       
         sen2r
-        1.4.1
+        1.4.2
       
     
 
diff --git a/docs/reference/safe_shortname.html b/docs/reference/safe_shortname.html
index 50693d39..a18e1004 100644
--- a/docs/reference/safe_shortname.html
+++ b/docs/reference/safe_shortname.html
@@ -77,7 +77,7 @@
       
       
         sen2r
-        1.4.1
+        1.4.2
       
     
 
diff --git a/docs/reference/safelist-class.html b/docs/reference/safelist-class.html
index 6b5133d9..97bdc388 100644
--- a/docs/reference/safelist-class.html
+++ b/docs/reference/safelist-class.html
@@ -88,7 +88,7 @@
       
       
         sen2r
-        1.4.1
+        1.4.2
       
     
 
diff --git a/docs/reference/scihub_login.html b/docs/reference/scihub_login.html
index febf46ea..6cb71b49 100644
--- a/docs/reference/scihub_login.html
+++ b/docs/reference/scihub_login.html
@@ -77,7 +77,7 @@
       
       
         sen2r
-        1.4.1
+        1.4.2
       
     
 
@@ -247,12 +247,15 @@ 
    AuthorLorenzo Busetto, phD (2019)
    
 
     
    Examples
    
-    
      check_scihub_login("user", "user")
-
    #> [1] TRUE
      write_scihub_login("user", "user")
-  read_scihub_login()
-
    #>      [,1]   [,2]  
-#> [1,] "user" "user"
      check_scihub_connection()
-
    #> [1] TRUE
    
+    
    # \donttest{
+check_scihub_connection()
+
    #> [1] TRUE
    # }
+if (FALSE) {
+check_scihub_login("username", "password")
+write_scihub_login("username", "password")
+read_scihub_login()
+}
+
    
   
   
 
diff --git a/docs/reference/sen2r.html b/docs/reference/sen2r.html
index 9df8d50a..33c6451f 100644
--- a/docs/reference/sen2r.html
+++ b/docs/reference/sen2r.html
@@ -76,7 +76,7 @@
       
       
         sen2r
-        1.4.1
+        1.4.2
       
     
 
@@ -758,27 +758,28 @@ 
    Examp
 if (interactive()) {
   sen2r()
 }
-
    #> [2021-03-02 08:38:32] #### Starting sen2r execution. ####
    #> [2021-03-02 08:38:32] Launching GUI...
    #> Loading required package: shiny
    #> 
-#> Listening on http://127.0.0.1:5413
    #> [2021-03-02 08:38:39] Program interrupted by the user (GUI closed).
    
+
 # Launch a processing from a saved JSON file (here we use an internal function
 # to create a testing json file - this is not intended to be used by final users)
 json_path <- build_example_param_file()
 
 out_paths_2 <- sen2r(json_path)
-
    #> [2021-03-02 08:38:39] #### Starting sen2r execution. ####
    #> [2021-03-02 08:38:40] Searching for available SAFE products on
-#>        SciHub...
    #> although coordinates are longitude/latitude, st_union assumes that they are planar
    #> [2021-03-02 08:38:42] Computing output names...
    #> [2021-03-02 08:38:43] Starting to download the required level-2A SAFE
+
    #> [2021-03-04 09:20:49] #### Starting sen2r execution. ####
    #> Loading required namespace: stringi
    #> Registered S3 method overwritten by 'geojsonlint':
+#>   method         from 
+#>   print.location dplyr
    #> [2021-03-04 09:20:50] Searching for available SAFE products on
+#>        SciHub...
    #> although coordinates are longitude/latitude, st_union assumes that they are planar
    #> [2021-03-04 09:20:52] Computing output names...
    #> [2021-03-04 09:20:53] Starting to download the required level-2A SAFE
 #>        products.
    #> Images
 #> S2B_MSIL2A_20200801T100559_N0214_R022_T32TNS_20200801T135302.SAFE are
 #> already on your system and will be skipped. Set "overwrite_safe" to
-#> TRUE to re-download them.
    #> No L2A images are needed.
    #> [2021-03-02 08:38:43] Download of level-2A SAFE products terminated.
    #> [2021-03-02 08:38:43] Starting to download the required level-1C SAFE
-#>        products.
    #> No L1C images are needed.
    #> [2021-03-02 08:38:43] Download of level-1C SAFE products terminated.
    #> [2021-03-02 08:38:43] Updating output names...
    #> [2021-03-02 08:38:43] Starting to translate SAFE products in custom
-#>        format.
    #> Using UTM zone 32N.
    #> 2 output files were correctly created.
    #> [2021-03-02 08:38:44] Starting to merge tiles by orbit.
    #> Using projection "EPSG:32632".
    #> [2021-03-02 08:38:44] Starting to edit geometry (clip, reproject,
-#>        rescale).
    #> [2021-03-02 08:38:45] Producing required RGB images.
    #> [2021-03-02 08:38:45] Generating image
-#>        S2B2A_20200801_022_sen2r_RGB432B_10.tif...
    #> [2021-03-02 08:38:54] Generating image
-#>        S2B2A_20200801_022_sen2r_RGB843B_10.tif...
    #> 2 output RGB files were correctly created.
    #> [2021-03-02 08:39:23] Computing required spectral indices.
    #> [2021-03-02 08:39:23] Computing index MSAVI2 on date 2020-08-01...
    #> [2021-03-02 08:39:33] Computing index NDVI on date 2020-08-01...
    #> [2021-03-02 08:39:42] Generating thumbnails.
    #> 6 output files were correctly created.
    #> ╔══════════════════════════════════════════════════════════════════════
+#> TRUE to re-download them.
    #> No L2A images are needed.
    #> [2021-03-04 09:20:53] Download of level-2A SAFE products terminated.
    #> [2021-03-04 09:20:53] Starting to download the required level-1C SAFE
+#>        products.
    #> No L1C images are needed.
    #> [2021-03-04 09:20:53] Download of level-1C SAFE products terminated.
    #> [2021-03-04 09:20:53] Updating output names...
    #> [2021-03-04 09:20:54] Starting to translate SAFE products in custom
+#>        format.
    #> Using UTM zone 32N.
    #> 2 output files were correctly created.
    #> [2021-03-04 09:20:54] Starting to merge tiles by orbit.
    #> Using projection "EPSG:32632".
    #> [2021-03-04 09:20:54] Starting to edit geometry (clip, reproject,
+#>        rescale).
    #> [2021-03-04 09:20:55] Producing required RGB images.
    #> [2021-03-04 09:20:55] Generating image
+#>        S2B2A_20200801_022_sen2r_RGB432B_10.tif...
    #> [2021-03-04 09:21:01] Generating image
+#>        S2B2A_20200801_022_sen2r_RGB843B_10.tif...
    #> 2 output RGB files were correctly created.
    #> [2021-03-04 09:21:18] Computing required spectral indices.
    #> [2021-03-04 09:21:18] Computing index MSAVI2 on date 2020-08-01...
    #> [2021-03-04 09:21:23] Computing index NDVI on date 2020-08-01...
    #> [2021-03-04 09:21:29] Generating thumbnails.
    #> 6 output files were correctly created.
    #> ╔══════════════════════════════════════════════════════════════════════
 #> ║ sen2r Processing Report
-#> ╟──────────────────────────────────────────────────────────────────────
    #> ║ Dates to be processed based on processing parameters: 1
    #> ║ Processing completed for: all expected dates.
    #> ╚══════════════════════════════════════════════════════════════════════
    #> [2021-03-02 08:39:53] #### sen2r session terminated. ####
    #> The processing chain can be re-launched with the command:
-#>   sen2r("/home/lranghetti/.sen2r/proc_par/s2proc_20210302_083840.json")
    # Notice that passing the path of a JSON file results in launching
+#> ╟──────────────────────────────────────────────────────────────────────
    #> ║ Dates to be processed based on processing parameters: 1
    #> ║ Processing completed for: all expected dates.
    #> ╚══════════════════════════════════════════════════════════════════════
    #> [2021-03-04 09:21:35] #### sen2r session terminated. ####
    #> The processing chain can be re-launched with the command:
+#>   sen2r("/home/lranghetti/.sen2r/proc_par/s2proc_20210304_092049.json")
    # Notice that passing the path of a JSON file results in launching
 # a session without opening the gui, unless gui = TRUE is passed.
 
 # Launch a processing using function arguments
@@ -799,26 +800,26 @@ 
    Examp
   path_l2a = safe_dir,
   path_out = out_dir_3
 )
-
    #> [2021-03-02 08:39:53] #### Starting sen2r execution. ####
    #> [2021-03-02 08:39:54] Searching for available SAFE products on
-#>        SciHub...
    #> although coordinates are longitude/latitude, st_union assumes that they are planar
    #> although coordinates are longitude/latitude, st_union assumes that they are planar
    #> [2021-03-02 08:39:56] Computing output names...
    #> [2021-03-02 08:39:57] Starting to download the required level-2A SAFE
+
    #> [2021-03-04 09:21:36] #### Starting sen2r execution. ####
    #> [2021-03-04 09:21:36] Searching for available SAFE products on
+#>        SciHub...
    #> although coordinates are longitude/latitude, st_union assumes that they are planar
    #> although coordinates are longitude/latitude, st_union assumes that they are planar
    #> [2021-03-04 09:21:40] Computing output names...
    #> [2021-03-04 09:21:41] Starting to download the required level-2A SAFE
 #>        products.
    #> Images
 #> S2B_MSIL2A_20200801T100559_N0214_R022_T32TNS_20200801T135302.SAFE are
 #> already on your system and will be skipped. Set "overwrite_safe" to
-#> TRUE to re-download them.
    #> No L2A images are needed.
    #> [2021-03-02 08:39:57] Download of level-2A SAFE products terminated.
    #> [2021-03-02 08:39:57] Starting to download the required level-1C SAFE
+#> TRUE to re-download them.
    #> No L2A images are needed.
    #> [2021-03-04 09:21:41] Download of level-2A SAFE products terminated.
    #> [2021-03-04 09:21:41] Starting to download the required level-1C SAFE
 #>        products.
    #> Images
 #> S2B_MSIL1C_20200801T100559_N0209_R022_T32TNS_20200801T130136.SAFE are
 #> already on your system and will be skipped. Set "overwrite_safe" to
-#> TRUE to re-download them.
    #> No L1C images are needed.
    #> [2021-03-02 08:39:57] Download of level-1C SAFE products terminated.
    #> [2021-03-02 08:39:57] Updating output names...
    #> [2021-03-02 08:39:57] Starting to translate SAFE products in custom
-#>        format.
    #> Using UTM zone 32N.
    #> 1 output files were correctly created.
    #> Using UTM zone 32N.
    #> 2 output files were correctly created.
    #> [2021-03-02 08:39:58] Starting to merge tiles by orbit.
    #> Using projection "EPSG:32632".
    #> [2021-03-02 08:39:59] Starting to edit geometry (clip, reproject,
-#>        rescale).
    #> [2021-03-02 08:39:59] Starting to apply cloud masks.
    #> [2021-03-02 08:39:59] Masking file
-#>        S2B1C_20200801_022_Barbellino_TOA_10.tif...
    #> [2021-03-02 08:40:08] Masking file
-#>        S2B2A_20200801_022_Barbellino_BOA_10.tif...
    #> [2021-03-02 08:40:17] Producing required RGB images.
    #> [2021-03-02 08:40:17] Generating image
-#>        S2B1C_20200801_022_Barbellino_RGB432T_10.tif...
    #> 1 output RGB files were correctly created.
    #> [2021-03-02 08:40:27] Generating image
-#>        S2B2A_20200801_022_Barbellino_RGB432B_10.tif...
    #> [2021-03-02 08:40:37] Generating image
-#>        S2B2A_20200801_022_Barbellino_RGB843B_10.tif...
    #> 2 output RGB files were correctly created.
    #> [2021-03-02 08:41:07] Computing required spectral indices.
    #> [2021-03-02 08:41:07] Computing index NDVI on date 2020-08-01...
    #> [2021-03-02 08:41:08] Computing index MSAVI2 on date 2020-08-01...
    #> [2021-03-02 08:41:09] Generating thumbnails.
    #> 8 output files were correctly created.
    #> ╔══════════════════════════════════════════════════════════════════════
+#> TRUE to re-download them.
    #> No L1C images are needed.
    #> [2021-03-04 09:21:41] Download of level-1C SAFE products terminated.
    #> [2021-03-04 09:21:41] Updating output names...
    #> [2021-03-04 09:21:41] Starting to translate SAFE products in custom
+#>        format.
    #> Using UTM zone 32N.
    #> 1 output files were correctly created.
    #> Using UTM zone 32N.
    #> 2 output files were correctly created.
    #> [2021-03-04 09:21:42] Starting to merge tiles by orbit.
    #> Using projection "EPSG:32632".
    #> [2021-03-04 09:21:42] Starting to edit geometry (clip, reproject,
+#>        rescale).
    #> [2021-03-04 09:21:43] Starting to apply cloud masks.
    #> [2021-03-04 09:21:43] Masking file
+#>        S2B1C_20200801_022_Barbellino_TOA_10.tif...
    #> [2021-03-04 09:21:49] Masking file
+#>        S2B2A_20200801_022_Barbellino_BOA_10.tif...
    #> [2021-03-04 09:21:55] Producing required RGB images.
    #> [2021-03-04 09:21:55] Generating image
+#>        S2B1C_20200801_022_Barbellino_RGB432T_10.tif...
    #> 1 output RGB files were correctly created.
    #> [2021-03-04 09:22:01] Generating image
+#>        S2B2A_20200801_022_Barbellino_RGB432B_10.tif...
    #> [2021-03-04 09:22:07] Generating image
+#>        S2B2A_20200801_022_Barbellino_RGB843B_10.tif...
    #> 2 output RGB files were correctly created.
    #> [2021-03-04 09:22:23] Computing required spectral indices.
    #> [2021-03-04 09:22:24] Computing index NDVI on date 2020-08-01...
    #> [2021-03-04 09:22:24] Computing index MSAVI2 on date 2020-08-01...
    #> [2021-03-04 09:22:25] Generating thumbnails.
    #> 8 output files were correctly created.
    #> ╔══════════════════════════════════════════════════════════════════════
 #> ║ sen2r Processing Report
-#> ╟──────────────────────────────────────────────────────────────────────
    #> ║ Dates to be processed based on processing parameters: 1
    #> ║ Processing completed for: all expected dates.
    #> ╚══════════════════════════════════════════════════════════════════════
    #> [2021-03-02 08:41:29] #### sen2r session terminated. ####
    #> The processing chain can be re-launched with the command:
-#>   sen2r("/home/lranghetti/.sen2r/proc_par/s2proc_20210302_083953.json")
    
+#> ╟──────────────────────────────────────────────────────────────────────
    #> ║ Dates to be processed based on processing parameters: 1
    #> ║ Processing completed for: all expected dates.
    #> ╚══════════════════════════════════════════════════════════════════════
    #> [2021-03-04 09:22:36] #### sen2r session terminated. ####
    #> The processing chain can be re-launched with the command:
+#>   sen2r("/home/lranghetti/.sen2r/proc_par/s2proc_20210304_092136.json")
    
 # Launch a processing based on a JSON file, but changing some parameters
 # (e.g., the same processing on a different extent)
 out_dir_4 <- tempfile(pattern = "Scalve_")
@@ -828,21 +829,21 @@ 
    Examp
   extent_name = "Scalve",
   path_out = out_dir_4
 )
-
    #> [2021-03-02 08:41:29] #### Starting sen2r execution. ####
    #> [2021-03-02 08:41:30] Searching for available SAFE products on
-#>        SciHub...
    #> although coordinates are longitude/latitude, st_union assumes that they are planar
    #> [2021-03-02 08:41:33] Computing output names...
    #> [2021-03-02 08:41:33] Starting to download the required level-2A SAFE
+
    #> [2021-03-04 09:22:37] #### Starting sen2r execution. ####
    #> [2021-03-04 09:22:37] Searching for available SAFE products on
+#>        SciHub...
    #> although coordinates are longitude/latitude, st_union assumes that they are planar
    #> [2021-03-04 09:22:40] Computing output names...
    #> [2021-03-04 09:22:41] Starting to download the required level-2A SAFE
 #>        products.
    #> Images
 #> S2B_MSIL2A_20200801T100559_N0214_R022_T32TNR_20200801T135302.SAFE,
 #> S2B_MSIL2A_20200801T100559_N0214_R022_T32TNS_20200801T135302.SAFE are
 #> already on your system and will be skipped. Set "overwrite_safe" to
-#> TRUE to re-download them.
    #> No L2A images are needed.
    #> [2021-03-02 08:41:33] Download of level-2A SAFE products terminated.
    #> [2021-03-02 08:41:33] Starting to download the required level-1C SAFE
-#>        products.
    #> No L1C images are needed.
    #> [2021-03-02 08:41:33] Download of level-1C SAFE products terminated.
    #> [2021-03-02 08:41:33] Updating output names...
    #> [2021-03-02 08:41:34] Starting to translate SAFE products in custom
-#>        format.
    #> Using UTM zone 32N.
    #> 2 output files were correctly created.
    #> Using UTM zone 32N.
    #> 2 output files were correctly created.
    #> [2021-03-02 08:41:34] Starting to merge tiles by orbit.
    #> Using projection "EPSG:32632".
    #> [2021-03-02 08:41:35] Starting to edit geometry (clip, reproject,
-#>        rescale).
    #> [2021-03-02 08:41:41] Producing required RGB images.
    #> [2021-03-02 08:41:41] Generating image
-#>        S2B2A_20200801_022_Scalve_RGB432B_10.tif...
    #> [2021-03-02 08:41:45] Generating image
-#>        S2B2A_20200801_022_Scalve_RGB843B_10.tif...
    #> 2 output RGB files were correctly created.
    #> [2021-03-02 08:41:49] Computing required spectral indices.
    #> [2021-03-02 08:41:49] Computing index MSAVI2 on date 2020-08-01...
    #> [2021-03-02 08:41:52] Computing index NDVI on date 2020-08-01...
    #> [2021-03-02 08:41:54] Generating thumbnails.
    #> 6 output files were correctly created.
    #> ╔══════════════════════════════════════════════════════════════════════
+#> TRUE to re-download them.
    #> No L2A images are needed.
    #> [2021-03-04 09:22:41] Download of level-2A SAFE products terminated.
    #> [2021-03-04 09:22:41] Starting to download the required level-1C SAFE
+#>        products.
    #> No L1C images are needed.
    #> [2021-03-04 09:22:41] Download of level-1C SAFE products terminated.
    #> [2021-03-04 09:22:41] Updating output names...
    #> [2021-03-04 09:22:41] Starting to translate SAFE products in custom
+#>        format.
    #> Using UTM zone 32N.
    #> 2 output files were correctly created.
    #> Using UTM zone 32N.
    #> 2 output files were correctly created.
    #> [2021-03-04 09:22:42] Starting to merge tiles by orbit.
    #> Using projection "EPSG:32632".
    #> [2021-03-04 09:22:42] Starting to edit geometry (clip, reproject,
+#>        rescale).
    #> [2021-03-04 09:22:49] Producing required RGB images.
    #> [2021-03-04 09:22:49] Generating image
+#>        S2B2A_20200801_022_Scalve_RGB432B_10.tif...
    #> [2021-03-04 09:22:52] Generating image
+#>        S2B2A_20200801_022_Scalve_RGB843B_10.tif...
    #> 2 output RGB files were correctly created.
    #> [2021-03-04 09:22:56] Computing required spectral indices.
    #> [2021-03-04 09:22:56] Computing index MSAVI2 on date 2020-08-01...
    #> [2021-03-04 09:22:58] Computing index NDVI on date 2020-08-01...
    #> [2021-03-04 09:23:00] Generating thumbnails.
    #> 6 output files were correctly created.
    #> ╔══════════════════════════════════════════════════════════════════════
 #> ║ sen2r Processing Report
-#> ╟──────────────────────────────────────────────────────────────────────
    #> ║ Dates to be processed based on processing parameters: 2
    #> ║ Processing completed for: all expected dates.
    #> ╚══════════════════════════════════════════════════════════════════════
    #> [2021-03-02 08:41:58] #### sen2r session terminated. ####
    #> The processing chain can be re-launched with the command:
-#>   sen2r("/home/lranghetti/.sen2r/proc_par/s2proc_20210302_084129.json")
    
+#> ╟──────────────────────────────────────────────────────────────────────
    #> ║ Dates to be processed based on processing parameters: 2
    #> ║ Processing completed for: all expected dates.
    #> ╚══════════════════════════════════════════════════════════════════════
    #> [2021-03-04 09:23:02] #### sen2r session terminated. ####
    #> The processing chain can be re-launched with the command:
+#>   sen2r("/home/lranghetti/.sen2r/proc_par/s2proc_20210304_092237.json")
    
 
 # Show outputs (loading thumbnails)
 
diff --git a/docs/reference/sen2r_getElements.html b/docs/reference/sen2r_getElements.html
index 483e2ac4..4d94271f 100644
--- a/docs/reference/sen2r_getElements.html
+++ b/docs/reference/sen2r_getElements.html
@@ -74,7 +74,7 @@
       
       
         sen2r
-        1.4.1
+        1.4.2
       
     
    
 
diff --git a/docs/reference/sen2r_process_report.html b/docs/reference/sen2r_process_report.html
index aea1e962..541bf2e2 100644
--- a/docs/reference/sen2r_process_report.html
+++ b/docs/reference/sen2r_process_report.html
@@ -73,7 +73,7 @@
       
       
         sen2r
-        1.4.1
+        1.4.2
       
     
 
diff --git a/docs/reference/smooth_mask.html b/docs/reference/smooth_mask.html
index 8d82f7b7..2b35e6cc 100644
--- a/docs/reference/smooth_mask.html
+++ b/docs/reference/smooth_mask.html
@@ -75,7 +75,7 @@
       
       
         sen2r
-        1.4.1
+        1.4.2
       
     
 
diff --git a/docs/reference/st_as_text_2.html b/docs/reference/st_as_text_2.html
index 0d32a4c8..d80a217f 100644
--- a/docs/reference/st_as_text_2.html
+++ b/docs/reference/st_as_text_2.html
@@ -78,7 +78,7 @@
       
       
         sen2r
-        1.4.1
+        1.4.2
       
     
 
diff --git a/docs/reference/st_crs2.html b/docs/reference/st_crs2.html
index 36714ad9..a76de5cb 100644
--- a/docs/reference/st_crs2.html
+++ b/docs/reference/st_crs2.html
@@ -75,7 +75,7 @@
       
       
         sen2r
-        1.4.1
+        1.4.2
       
     
 
diff --git a/docs/reference/stack2rgb.html b/docs/reference/stack2rgb.html
index efe269e6..90034121 100644
--- a/docs/reference/stack2rgb.html
+++ b/docs/reference/stack2rgb.html
@@ -74,7 +74,7 @@
       
       
         sen2r
-        1.4.1
+        1.4.2
       
     
 
diff --git a/docs/reference/str_pad2.html b/docs/reference/str_pad2.html
index 74566108..e92d7608 100644
--- a/docs/reference/str_pad2.html
+++ b/docs/reference/str_pad2.html
@@ -76,7 +76,7 @@
       
       
         sen2r
-        1.4.1
+        1.4.2
       
     
 
diff --git a/docs/reference/suppress_warnings.html b/docs/reference/suppress_warnings.html
index 0d595393..08902ee2 100644
--- a/docs/reference/suppress_warnings.html
+++ b/docs/reference/suppress_warnings.html
@@ -72,7 +72,7 @@
       
       
         sen2r
-        1.4.1
+        1.4.2
       
     
 
diff --git a/docs/reference/tile_utmzone.html b/docs/reference/tile_utmzone.html
index f8a0d641..c0a523d7 100644
--- a/docs/reference/tile_utmzone.html
+++ b/docs/reference/tile_utmzone.html
@@ -73,7 +73,7 @@
       
       
         sen2r
-        1.4.1
+        1.4.2
       
     
 
diff --git a/docs/reference/tiles_intersects.html b/docs/reference/tiles_intersects.html
index fa515c08..a73602f4 100644
--- a/docs/reference/tiles_intersects.html
+++ b/docs/reference/tiles_intersects.html
@@ -73,7 +73,7 @@
       
       
         sen2r
-        1.4.1
+        1.4.2
       
     
 
diff --git a/docs/reference/trace_function.html b/docs/reference/trace_function.html
index da1f8a69..51c736d0 100644
--- a/docs/reference/trace_function.html
+++ b/docs/reference/trace_function.html
@@ -91,7 +91,7 @@
       
       
         sen2r
-        1.4.1
+        1.4.2
       
     
 
diff --git a/man/s2_order.Rd b/man/s2_order.Rd
index 8f35078f..9583e8c1 100644
--- a/man/s2_order.Rd
+++ b/man/s2_order.Rd
@@ -70,11 +70,11 @@ License: GPL 3.0
 \donttest{
 # Generate the lists of products
 pos <- sf::st_sfc(sf::st_point(c(-57.8815,-51.6954)), crs = 4326)
-time_window <- as.Date(c("2018-02-21", "2018-03-20"))
+time_window <- as.Date(c("2019-10-21", "2019-11-20"))
 list_safe <- s2_list(spatial_extent = pos, time_interval = time_window)
 print(list_safe)
-# (at the time the documentation was written, this list was containing 5
-# archives already available online and 2 stored in the Long Term Archive)
+# (at the time the documentation was updated, this list was containing 6
+# archives already available online and 3 stored in the Long Term Archive)
 
 # Order the products
 ordered_prods <- s2_order(list_safe)
diff --git a/man/scihub_login.Rd b/man/scihub_login.Rd
index 3822b85d..9d4c4ba0 100644
--- a/man/scihub_login.Rd
+++ b/man/scihub_login.Rd
@@ -69,10 +69,14 @@ and password edits on old credentials are not immediately recognised.
 License: GPL 3.0
 }
 \examples{
-  check_scihub_login("user", "user")
-  write_scihub_login("user", "user")
-  read_scihub_login()
-  check_scihub_connection()
+\donttest{
+check_scihub_connection()
+}
+\dontrun{
+check_scihub_login("username", "password")
+write_scihub_login("username", "password")
+read_scihub_login()
+}
 }
 \references{
 L. Ranghetti, M. Boschetti, F. Nutini, L. Busetto (2020).
diff --git a/tests/testthat/setup-scihub_creds.R b/tests/testthat/setup-scihub_creds.R
index e59f43cb..448a5a0e 100644
--- a/tests/testthat/setup-scihub_creds.R
+++ b/tests/testthat/setup-scihub_creds.R
@@ -4,19 +4,20 @@ tests_apihub <- if (Sys.getenv("TRAVIS") == "true") {c(
   Sys.getenv("TRAVIS_PASSWORD")
 )} else {
   saved_creds <- try(sen2r::read_scihub_login(), silent = TRUE)
-  if (inherits(saved_creds, "try-error")) {
-    c("user", "user")
-  } else {
-    saved_creds[1,]
-  }
 }
 
-# Use a temporary apihub file
-write_scihub_login(
-  tests_apihub[1], tests_apihub[2],
-  tests_apihub_path <- tempfile(),
-  check = FALSE
-)
-
-# Return message
-message("Tests are run with SciHub user \"",tests_apihub[1],"\".")
+if (!inherits(saved_creds, "try-error")) {
+  
+  # Use a temporary apihub file
+  write_scihub_login(
+    tests_apihub[1], tests_apihub[2],
+    tests_apihub_path <- tempfile(),
+    check = FALSE
+  )
+  
+  # Return message
+  message("Tests are run with SciHub user \"",tests_apihub[1],"\".")
+  
+} else {
+  message("Problems with SciHub credentials; check secrets.")
+}