From ae28598f70732aabe1ee3a2dbe2713f7d3a60c85 Mon Sep 17 00:00:00 2001 From: Matthew Richards Date: Mon, 20 Jun 2022 10:44:37 +0000 Subject: [PATCH] Downgrade to FastAPI 0.68.2 - Using this version of FastAPI gives us Starlette 0.14.2 which fixes a bug we faced - Bug described at https://github.com/encode/starlette/issues/1315 - Downgrading FastAPI means `UploadFile` is no longer supported. I've reverted to `File()` as an alternative solution, although `UploadFile` is probably easier to use, and I'd reimplement it in that way if we could upgrade in the future --- .../src/routes/ingest_data.py | 16 +- poetry.lock | 158 ++++++------------ pyproject.toml | 2 +- 3 files changed, 59 insertions(+), 117 deletions(-) diff --git a/operationsgateway_api/src/routes/ingest_data.py b/operationsgateway_api/src/routes/ingest_data.py index 76f97811..20ccfe9e 100644 --- a/operationsgateway_api/src/routes/ingest_data.py +++ b/operationsgateway_api/src/routes/ingest_data.py @@ -1,6 +1,6 @@ import logging -from fastapi import APIRouter, UploadFile +from fastapi import APIRouter, File from operationsgateway_api.src.data_encoding import DataEncoding from operationsgateway_api.src.hdf_handler import HDFDataHandler @@ -21,12 +21,11 @@ @router.post("/submit_hdf", response_description="") -async def submit_hdf(file: UploadFile): +async def submit_hdf(file: bytes = File(default=None)): log.info("Submitting CLF data in HDF file to be processed then stored in MongoDB") - log.debug("Filename: %s, Content: %s", file.filename, file.content_type) + #log.debug("Filename: %s, Content: %s", file.filename, file.content_type) - file_contents = await file.read() - hdf_file = HDFDataHandler.convert_to_hdf_from_request(file_contents) + hdf_file = HDFDataHandler.convert_to_hdf_from_request(file) record, waveforms, images = HDFDataHandler.extract_hdf_data(hdf_file=hdf_file) DataEncoding.encode_numpy_for_mongo(record) @@ -81,12 +80,11 @@ async def submit_hdf(file: UploadFile): response_description="Upload a HDF file, extract the contents and store the data in" " MongoDB", ) -async def submit_hdf_basic(file: UploadFile): +async def submit_hdf_basic(file: File(default=None)): log.info("Adding contents of attached file to MongoDB") - log.debug("Filename: %s, Content: %s", file.filename, file.content_type) + #log.debug("Filename: %s, Content: %s", file.filename, file.content_type) - file_contents = await file.read() - hdf_file = HDFDataHandler.convert_to_hdf_from_request(file_contents) + hdf_file = HDFDataHandler.convert_to_hdf_from_request(file) # TODO - do something with these images record, waveforms, images = HDFDataHandler.extract_hdf_data(hdf_file=hdf_file) diff --git a/poetry.lock b/poetry.lock index 412d60b1..5319514c 100644 --- a/poetry.lock +++ b/poetry.lock @@ -9,26 +9,6 @@ python-versions = ">=3.5" [package.dependencies] contextvars = {version = "2.4", markers = "python_version < \"3.7\""} -[[package]] -name = "anyio" -version = "3.5.0" -description = "High level compatibility layer for multiple asynchronous event loop implementations" -category = "main" -optional = false -python-versions = ">=3.6.2" - -[package.dependencies] -contextvars = {version = "*", markers = "python_version < \"3.7\""} -dataclasses = {version = "*", markers = "python_version < \"3.7\""} -idna = ">=2.8" -sniffio = ">=1.1" -typing-extensions = {version = "*", markers = "python_version < \"3.8\""} - -[package.extras] -doc = ["packaging", "sphinx-rtd-theme", "sphinx-autodoc-typehints (>=1.2.0)"] -test = ["coverage[toml] (>=4.5)", "hypothesis (>=4.0)", "pytest (>=6.0)", "pytest-mock (>=3.6.1)", "trustme", "contextlib2", "uvloop (<0.15)", "mock (>=4)", "uvloop (>=0.15)"] -trio = ["trio (>=0.16)"] - [[package]] name = "asgiref" version = "3.4.1" @@ -142,14 +122,6 @@ category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" -[[package]] -name = "contextlib2" -version = "21.6.0" -description = "Backports and enhancements for the contextlib module" -category = "main" -optional = false -python-versions = ">=3.6" - [[package]] name = "contextvars" version = "2.4" @@ -195,7 +167,7 @@ pipenv = ["pipenv"] [[package]] name = "fastapi" -version = "0.75.2" +version = "0.68.2" description = "FastAPI framework, high performance, easy to learn, fast to code, ready for production" category = "main" optional = false @@ 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