Variantstore: Changelog

The format is based on Keep a Changelog and this project adheres to Semantic Versioning.

v1.1.0 - The Proline Depot - 2022-12-06

`Added`

#57 Add GitHub Actions to create and publish Docker image
#50 Add Database interface for PostgreSQL (#37, #38)
#50 Use Micronaut Data
#50 Factory classes for entities
#52 Transaction repository for MariaDB
#53 Ensembl gene import for PostgreSQL
#58 Server-side view for Variantstore status
#59 Documentation on OAuth 2.0 configuration
#62 Endpoint/Controller for project entity

`Changed`

#50 Update Micronaut version to 3.x
#50 Use Testcontainers for tests
#50 Use Flyway for database migration
#50 Adapt configuration to work with MariaDB OR PostgreSQL
#55, #56 Extend documentation
#64 Update dependencies, remove log4j

`Fixed`

#52 Transaction registration during VCF import
#59 OAuth 2.0 configuration
#61 Variant import bug (#60)

v1.0.1 - 2021-03-26

`Added`

`Changed`

Extend usage documentation and add examples
#43 - Prevent the creation of duplicate gene entries in the database (#40)

`Fixed`

#43 - Fix parsing of Ensembl version (#42)
#43 - Fix EnsemblParser bug caused by missing Gene constructor (#41)

v1.0.0 - Valmart - 2021-03-02

Initial release of Variantstore.

`Main features`

Store genomic variants with associated metadata
Import genomic variants in Variant Call Format
Export genomic variants from the store in JSON, FHIRT, and Variant Call Format
Query the store for genomic variants and metadata through defined REST entdpoints