Code

A first pass at storage#160

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liamhuber merged 203 commits intomainpyiron/pyiron_workflow:mainfrom simple_storagepyiron/pyiron_workflow:simple_storageCopy head branch name to clipboardFeb 17, 2024

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Commits on Jan 18, 2024

• Expose the set of package identifiers for child nodes on a composite

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• Add methods for interacting with tinybase.storage.H5ioStorage

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• Give public-facing save and load methods

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• Fail early on Workflow saves if any children are not from a package

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• Load discovered save files automatically

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• 🐛 use correct method name

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• Save list not set

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• Use renamed method

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• Clean the working directory attribute

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• Use H5ioStorage directly

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• Don't rely on return behaviour on DirectoryObject.delete

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• Revert the return behaviour on DirectoryObject.delete

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• Remove comment

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• No magic strings

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• Revert name changes on the DirectoryObject removing files method

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• Use FileObject directly

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• Store child nodes under their own label, not in a substorage

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• Stick the signals information into properties

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• Pull the same trick with the node class name

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• Modify remaining storage fields to use existing class fields

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• Refactor: slide

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• Remove serialization placeholders

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• Merge branch 'main' into simple_storage

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• Point storage to that node's particular storage spot

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Commits on Jan 19, 2024

• Break out the storage file path as a property

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• Use the save file property

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• Refactor: extract method for cleaning empty working directory

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• Refactor: extract method for deleting storage

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• Simplify logic clauses (a little)

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• Simplify logic clauses (actually)

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• Add comment

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• Rely on children loading themselves at instantiation

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• Refactor: extract method for readability

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• Refactor: extract methods for readability

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• Tidy the working directory after checking for storage contents

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• Tidy the working directory recursively for composites

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• Clean up at the very end too

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• Document saving as an alpha feature

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• Test saving and loading a node

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• 🐛 hack around the fact we're not inheriting from storable

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• Add a macro to the test demo nodes

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• Reload macro children explicitly

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• Test reloading composed workflows

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Commits on Jan 20, 2024

• Clean up after test

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• Update node package test to reflect new demo node

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• Only allow saving from the root

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• Merge branch 'main' into simple_storage

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• Add storage dependencies

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• [dependabot skip] Update env file

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• Add boto to componsate for contrib

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• Merge remote-tracking branch 'origin/simple_storage' into simple_storage

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• Add a flag to save at the end of a run

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• Cast known bools as bools on load

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• Merge remote-tracking branch 'origin/simple_storage' into simple_storage

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• Update README

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Commits on Jan 21, 2024

• Update deepdive

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• Propagate change to environment-notebooks.yml

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• Merge branch 'main' into simple_storage

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• Accumulate run signals with scoped labels not objects

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• Merge branch 'store_scoped_labels' into purge_channel_state

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• Require the callback to always be a method of the owning node

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• Just store the name of the callback instead of the object

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• Add tests

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• Fix tests where callback was not owned by the node

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• Merge branch 'main' into simple_storage

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• Merge branch 'simple_storage' into callbacks_as_strings

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• 🐛 Fix typo in __getstate__ return

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• Fix typo (missing words) in test message

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• Have composite pass its entire self for remote execution

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• Remove unused methods

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• Be consistent about copying and updating dict

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• Unparent local nodes before taking remote

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• 🐛 stop running

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• Don't reciprocally store the owning node in channel state

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• Don't store the owner-scope value receiver on channels

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• 🐛 workflows don't need to re-parent data IO

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• Don't store the connections on channels

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• 🐛 Don't override __get/setstate__ for OutputData

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• Use a singleton for NotData instead of the class

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• Update references to NotData in docs and strings

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• Re-execute the deepdive

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• Parent decorated nodes to the module their function came from

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Commits on Jan 26, 2024

• Use h5io as the default storage routine

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• Move tinybase requirements to optional

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• Depend on a version of h5io that doesn't exist yet

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• [dependabot skip] Update env file

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• Test tinybase backend

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• 🐛 Get the test passing by propagating storage mode flag

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• Refactor: break out a storage interface

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• Check for allowable back ends

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• Refactor: rename

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• Refactor to delay contrib import

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• h5io storage file should always be in the working directory

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• Add tests for modified macro storage

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• Test modified macro storage for the backends separately

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• NOT_DATA should work like None in the if-statement

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• add error message

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• Update spec

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• Test claims about saving workflows with children from different places

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• Merge branch 'parent_decorated_nodes_to_their_module' into store_with_h5io

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• Fix expected package length

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• Beautify _no_positional_args logic

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• Merge branch 'main' into simple_storage

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• Clean up the save file even if the test fails

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• Flatten the state path so it matches the semantic path

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• Add promise about child name namespace uniqueness

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• Add and test wrappers for sticking nodes in a pyiron job

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• Introduce and test an importability property

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• Extend node package count

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• Fail saving early if h5io won't be able to import your nodes

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• try...finally changing the classname

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• Return a string instead of printing

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