From 777065397117d5696154f514f48672b076fa39aa Mon Sep 17 00:00:00 2001 From: liamhuber Date: Mon, 4 Mar 2024 13:45:37 -0800 Subject: [PATCH 01/11] Sync secondary conda env file to setup --- .ci_support/environment-notebooks.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.ci_support/environment-notebooks.yml b/.ci_support/environment-notebooks.yml index 9c9b587f..5d8b018c 100644 --- a/.ci_support/environment-notebooks.yml +++ b/.ci_support/environment-notebooks.yml @@ -5,6 +5,6 @@ dependencies: - atomistics =0.1.23 - lammps - phonopy =2.21.0 - - pyiron_atomistics =0.4.15 + - pyiron_atomistics =0.4.17 - pyiron-data =0.0.27 - numpy =1.26.4 \ No newline at end of file From 5d5f0f18767b756c32ce0e545bc3c02f84df4120 Mon Sep 17 00:00:00 2001 From: liamhuber Date: Mon, 4 Mar 2024 13:45:56 -0800 Subject: [PATCH 02/11] Bump base --- .ci_support/environment.yml | 2 +- setup.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.ci_support/environment.yml b/.ci_support/environment.yml index 6307c54c..7890c23c 100644 --- a/.ci_support/environment.yml +++ b/.ci_support/environment.yml @@ -9,7 +9,7 @@ dependencies: - h5io =0.2.2 - h5io_browser =0.0.9 - matplotlib =3.8.2 -- pyiron_base =0.7.8 +- pyiron_base =0.7.10 - pyiron_contrib =0.1.15 - pympipool =0.7.13 - python-graphviz =0.20.1 diff --git a/setup.py b/setup.py index 22c155d4..6bb36403 100644 --- a/setup.py +++ b/setup.py @@ -34,7 +34,7 @@ 'h5io==0.2.2', 'h5io_browser==0.0.9', 'matplotlib==3.8.2', - 'pyiron_base==0.7.8', + 'pyiron_base==0.7.10', 'pyiron_contrib==0.1.15', 'pympipool==0.7.13', 'toposort==1.10', From 0cce644b0f8846e0794485aabfb7288e23b3e601 Mon Sep 17 00:00:00 2001 From: liamhuber Date: Mon, 4 Mar 2024 13:46:14 -0800 Subject: [PATCH 03/11] Bump h5io_browser --- .ci_support/environment.yml | 2 +- setup.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.ci_support/environment.yml b/.ci_support/environment.yml index 7890c23c..d3cab6b7 100644 --- a/.ci_support/environment.yml +++ b/.ci_support/environment.yml @@ -7,7 +7,7 @@ dependencies: - cloudpickle =3.0.0 - graphviz =8.1.0 - h5io =0.2.2 -- h5io_browser =0.0.9 +- h5io_browser =0.0.10 - matplotlib =3.8.2 - pyiron_base =0.7.10 - pyiron_contrib =0.1.15 diff --git a/setup.py b/setup.py index 6bb36403..48d43c05 100644 --- a/setup.py +++ b/setup.py @@ -32,7 +32,7 @@ 'cloudpickle==3.0.0', 'graphviz==0.20.1', 'h5io==0.2.2', - 'h5io_browser==0.0.9', + 'h5io_browser==0.0.10', 'matplotlib==3.8.2', 'pyiron_base==0.7.10', 'pyiron_contrib==0.1.15', From f8071331fc4e5d12c2deb226b4509db43eb1acab Mon Sep 17 00:00:00 2001 From: liamhuber Date: Mon, 4 Mar 2024 13:48:01 -0800 Subject: [PATCH 04/11] Bump data --- .ci_support/environment-notebooks.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.ci_support/environment-notebooks.yml b/.ci_support/environment-notebooks.yml index 5d8b018c..794d559a 100644 --- a/.ci_support/environment-notebooks.yml +++ b/.ci_support/environment-notebooks.yml @@ -6,5 +6,5 @@ dependencies: - lammps - phonopy =2.21.0 - pyiron_atomistics =0.4.17 - - pyiron-data =0.0.27 + - pyiron-data =0.0.29 - numpy =1.26.4 \ No newline at end of file From 547718f5da342a39113bffa0e721ced5f0d003d7 Mon Sep 17 00:00:00 2001 From: liamhuber Date: Mon, 4 Mar 2024 13:48:15 -0800 Subject: [PATCH 05/11] Bump phonopy --- .ci_support/environment-notebooks.yml | 2 +- setup.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.ci_support/environment-notebooks.yml b/.ci_support/environment-notebooks.yml index 794d559a..7db01efe 100644 --- a/.ci_support/environment-notebooks.yml +++ b/.ci_support/environment-notebooks.yml @@ -4,7 +4,7 @@ dependencies: - ase =3.22.1 - atomistics =0.1.23 - lammps - - phonopy =2.21.0 + - phonopy =2.21.2 - pyiron_atomistics =0.4.17 - pyiron-data =0.0.29 - numpy =1.26.4 \ No newline at end of file diff --git a/setup.py b/setup.py index 48d43c05..f95fbd08 100644 --- a/setup.py +++ b/setup.py @@ -45,7 +45,7 @@ 'ase==3.22.1', 'atomistics==0.1.23', 'numpy==1.26.4', - 'phonopy==2.21.0', + 'phonopy==2.21.2', 'pyiron_atomistics==0.4.17', ], }, From cd0096ba9c432bdd1637d2f2ad966260aabfff72 Mon Sep 17 00:00:00 2001 From: liamhuber Date: Mon, 4 Mar 2024 13:49:16 -0800 Subject: [PATCH 06/11] Bump matplotlib --- .ci_support/environment.yml | 2 +- setup.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.ci_support/environment.yml b/.ci_support/environment.yml index d3cab6b7..f21cdedd 100644 --- a/.ci_support/environment.yml +++ b/.ci_support/environment.yml @@ -8,7 +8,7 @@ dependencies: - graphviz =8.1.0 - h5io =0.2.2 - h5io_browser =0.0.10 -- matplotlib =3.8.2 +- matplotlib =3.8.3 - pyiron_base =0.7.10 - pyiron_contrib =0.1.15 - pympipool =0.7.13 diff --git a/setup.py b/setup.py index f95fbd08..c64279c1 100644 --- a/setup.py +++ b/setup.py @@ -33,7 +33,7 @@ 'graphviz==0.20.1', 'h5io==0.2.2', 'h5io_browser==0.0.10', - 'matplotlib==3.8.2', + 'matplotlib==3.8.3', 'pyiron_base==0.7.10', 'pyiron_contrib==0.1.15', 'pympipool==0.7.13', From bc612a1a47c6347d17598030cd9ee0341b6c9f58 Mon Sep 17 00:00:00 2001 From: pyiron-runner Date: Mon, 4 Mar 2024 21:50:53 +0000 Subject: [PATCH 07/11] [dependabot skip] Update env file --- .binder/environment.yml | 12 ++++++------ docs/environment.yml | 6 +++--- 2 files changed, 9 insertions(+), 9 deletions(-) diff --git a/.binder/environment.yml b/.binder/environment.yml index 693ba547..327b1024 100644 --- a/.binder/environment.yml +++ b/.binder/environment.yml @@ -7,9 +7,9 @@ dependencies: - cloudpickle =3.0.0 - graphviz =8.1.0 - h5io =0.2.2 -- h5io_browser =0.0.9 -- matplotlib =3.8.2 -- pyiron_base =0.7.8 +- h5io_browser =0.0.10 +- matplotlib =3.8.3 +- pyiron_base =0.7.10 - pyiron_contrib =0.1.15 - pympipool =0.7.13 - python-graphviz =0.20.1 @@ -18,7 +18,7 @@ dependencies: - ase =3.22.1 - atomistics =0.1.23 - lammps -- phonopy =2.21.0 -- pyiron_atomistics =0.4.15 -- pyiron-data =0.0.27 +- phonopy =2.21.2 +- pyiron_atomistics =0.4.17 +- pyiron-data =0.0.29 - numpy =1.26.4 diff --git a/docs/environment.yml b/docs/environment.yml index fe373b0f..cc38dae6 100644 --- a/docs/environment.yml +++ b/docs/environment.yml @@ -12,9 +12,9 @@ dependencies: - cloudpickle =3.0.0 - graphviz =8.1.0 - h5io =0.2.2 -- h5io_browser =0.0.9 -- matplotlib =3.8.2 -- pyiron_base =0.7.8 +- h5io_browser =0.0.10 +- matplotlib =3.8.3 +- pyiron_base =0.7.10 - pyiron_contrib =0.1.15 - pympipool =0.7.13 - python-graphviz =0.20.1 From 8fe3c98564fde3528b5ab568700019911c87aae7 Mon Sep 17 00:00:00 2001 From: liamhuber Date: Mon, 4 Mar 2024 13:54:13 -0800 Subject: [PATCH 08/11] Downgrade pyiron_base For pyiron_atomistics --- .ci_support/environment.yml | 2 +- setup.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.ci_support/environment.yml b/.ci_support/environment.yml index f21cdedd..de7bedd5 100644 --- a/.ci_support/environment.yml +++ b/.ci_support/environment.yml @@ -9,7 +9,7 @@ dependencies: - h5io =0.2.2 - h5io_browser =0.0.10 - matplotlib =3.8.3 -- pyiron_base =0.7.10 +- pyiron_base =0.7.9 - pyiron_contrib =0.1.15 - pympipool =0.7.13 - python-graphviz =0.20.1 diff --git a/setup.py b/setup.py index c64279c1..542eff64 100644 --- a/setup.py +++ b/setup.py @@ -34,7 +34,7 @@ 'h5io==0.2.2', 'h5io_browser==0.0.10', 'matplotlib==3.8.3', - 'pyiron_base==0.7.10', + 'pyiron_base==0.7.9', 'pyiron_contrib==0.1.15', 'pympipool==0.7.13', 'toposort==1.10', From fe8ce27f986674228f5a7c5490b2c3da577c1571 Mon Sep 17 00:00:00 2001 From: pyiron-runner Date: Mon, 4 Mar 2024 21:54:49 +0000 Subject: [PATCH 09/11] [dependabot skip] Update env file --- .binder/environment.yml | 2 +- docs/environment.yml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.binder/environment.yml b/.binder/environment.yml index 327b1024..6086851e 100644 --- a/.binder/environment.yml +++ b/.binder/environment.yml @@ -9,7 +9,7 @@ dependencies: - h5io =0.2.2 - h5io_browser =0.0.10 - matplotlib =3.8.3 -- pyiron_base =0.7.10 +- pyiron_base =0.7.9 - pyiron_contrib =0.1.15 - pympipool =0.7.13 - python-graphviz =0.20.1 diff --git a/docs/environment.yml b/docs/environment.yml index cc38dae6..ec202552 100644 --- a/docs/environment.yml +++ b/docs/environment.yml @@ -14,7 +14,7 @@ dependencies: - h5io =0.2.2 - h5io_browser =0.0.10 - matplotlib =3.8.3 -- pyiron_base =0.7.10 +- pyiron_base =0.7.9 - pyiron_contrib =0.1.15 - pympipool =0.7.13 - python-graphviz =0.20.1 From da696b706c7f96cbadc4586c3d8fadae4a0fec52 Mon Sep 17 00:00:00 2001 From: liamhuber Date: Mon, 4 Mar 2024 13:57:41 -0800 Subject: [PATCH 10/11] Downgrade h5io_browser --- .ci_support/environment.yml | 2 +- setup.py | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.ci_support/environment.yml b/.ci_support/environment.yml index de7bedd5..bf0a695a 100644 --- a/.ci_support/environment.yml +++ b/.ci_support/environment.yml @@ -7,7 +7,7 @@ dependencies: - cloudpickle =3.0.0 - graphviz =8.1.0 - h5io =0.2.2 -- h5io_browser =0.0.10 +- h5io_browser =0.0.9 - matplotlib =3.8.3 - pyiron_base =0.7.9 - pyiron_contrib =0.1.15 diff --git a/setup.py b/setup.py index 542eff64..bdb15f75 100644 --- a/setup.py +++ b/setup.py @@ -32,7 +32,7 @@ 'cloudpickle==3.0.0', 'graphviz==0.20.1', 'h5io==0.2.2', - 'h5io_browser==0.0.10', + 'h5io_browser==0.0.9', 'matplotlib==3.8.3', 'pyiron_base==0.7.9', 'pyiron_contrib==0.1.15', From 64ced0542e683ffbacfae7616c6a6ed992795ccb Mon Sep 17 00:00:00 2001 From: pyiron-runner Date: Mon, 4 Mar 2024 21:58:39 +0000 Subject: [PATCH 11/11] [dependabot skip] Update env file --- .binder/environment.yml | 2 +- docs/environment.yml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.binder/environment.yml b/.binder/environment.yml index 6086851e..50b7baf5 100644 --- a/.binder/environment.yml +++ b/.binder/environment.yml @@ -7,7 +7,7 @@ dependencies: - cloudpickle =3.0.0 - graphviz =8.1.0 - h5io =0.2.2 -- h5io_browser =0.0.10 +- h5io_browser =0.0.9 - matplotlib =3.8.3 - pyiron_base =0.7.9 - pyiron_contrib =0.1.15 diff --git a/docs/environment.yml b/docs/environment.yml index ec202552..a94b41a3 100644 --- a/docs/environment.yml +++ b/docs/environment.yml @@ -12,7 +12,7 @@ dependencies: - cloudpickle =3.0.0 - graphviz =8.1.0 - h5io =0.2.2 -- h5io_browser =0.0.10 +- h5io_browser =0.0.9 - matplotlib =3.8.3 - pyiron_base =0.7.9 - pyiron_contrib =0.1.15