From 4291d072b60d62e28d4653a87ec15d60084b2154 Mon Sep 17 00:00:00 2001 From: samwaseda Date: Sat, 1 Feb 2025 17:41:53 +0000 Subject: [PATCH 1/3] Use latest semantikon version --- .ci_support/environment.yml | 2 +- .ci_support/lower_bound.yml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.ci_support/environment.yml b/.ci_support/environment.yml index c23037e..54d374d 100644 --- a/.ci_support/environment.yml +++ b/.ci_support/environment.yml @@ -6,7 +6,7 @@ dependencies: - owlready2 =0.47 - pandas =2.2.3 - pint =0.24.4 -- semantikon =0.0.9 +- semantikon =0.0.10 - pyiron_workflow =0.11.2 - rdflib =7.1.1 - owlrl =7.1.2 diff --git a/.ci_support/lower_bound.yml b/.ci_support/lower_bound.yml index db342dd..4b97ced 100644 --- a/.ci_support/lower_bound.yml +++ b/.ci_support/lower_bound.yml @@ -8,7 +8,7 @@ dependencies: - pint =0.24 - pyiron_atomistics =0.6.19 - pyiron-data =0.0.26 -- semantikon =0.0.9 +- semantikon =0.0.10 - pyiron_workflow =0.11.0 - rdflib =7.1.1 - owlrl =7.1.2 From 2bbe0c33768ddb1ad4878a3783e41f26c3d6276f Mon Sep 17 00:00:00 2001 From: pyiron-runner Date: Sat, 1 Feb 2025 17:42:39 +0000 Subject: [PATCH 2/3] [dependabot skip] Update env file --- .binder/environment.yml | 2 +- docs/environment.yml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/.binder/environment.yml b/.binder/environment.yml index 61dc0e9..db63310 100644 --- a/.binder/environment.yml +++ b/.binder/environment.yml @@ -6,7 +6,7 @@ dependencies: - owlready2 =0.47 - pandas =2.2.3 - pint =0.24.4 -- semantikon =0.0.9 +- semantikon =0.0.10 - pyiron_workflow =0.11.2 - rdflib =7.1.1 - owlrl =7.1.2 diff --git a/docs/environment.yml b/docs/environment.yml index 5a59693..c26c9e9 100644 --- a/docs/environment.yml +++ b/docs/environment.yml @@ -12,7 +12,7 @@ dependencies: - owlready2 =0.47 - pandas =2.2.3 - pint =0.24.4 -- semantikon =0.0.9 +- semantikon =0.0.10 - pyiron_workflow =0.11.2 - rdflib =7.1.1 - owlrl =7.1.2 From 32adb42b4de20fb2935571e7fa30e64f14f2322b Mon Sep 17 00:00:00 2001 From: samwaseda Date: Sun, 2 Feb 2025 08:02:15 +0000 Subject: [PATCH 3/3] Update meta_to_dict --- pyiron_ontology/parser.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/pyiron_ontology/parser.py b/pyiron_ontology/parser.py index b5144d7..2916b20 100644 --- a/pyiron_ontology/parser.py +++ b/pyiron_ontology/parser.py @@ -1,7 +1,7 @@ from typing import TypeAlias, Any import warnings -from semantikon.converter import parse_input_args, parse_output_args, _meta_to_dict +from semantikon.converter import parse_input_args, parse_output_args, meta_to_dict from rdflib import Graph, Literal, RDF, RDFS, URIRef, OWL, PROV, Namespace from pyiron_workflow import NOT_DATA, Workflow, Macro from pyiron_workflow.node import Node @@ -91,7 +91,7 @@ def _translate_has_value( parent=tag_uri, ) for k, v in dtype.__annotations__.items(): - metadata = _meta_to_dict(v) + metadata = meta_to_dict(v) _translate_has_value( graph=graph, label=label,