From fd102f92207cf37ef9f243e99678f802247eccee Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Sat, 4 Jan 2025 08:01:04 +0000
Subject: [PATCH 01/30] Bump numpy from 1.26.4 to 2.2.1

Bumps [numpy](https://github.com/numpy/numpy) from 1.26.4 to 2.2.1.
- [Release notes](https://github.com/numpy/numpy/releases)
- [Changelog](https://github.com/numpy/numpy/blob/main/doc/RELEASE_WALKTHROUGH.rst)
- [Commits](https://github.com/numpy/numpy/compare/v1.26.4...v2.2.1)

---
updated-dependencies:
- dependency-name: numpy
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 08c123b8a..045d45e9c 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -27,7 +27,7 @@ dependencies = [
     "executorlib==0.0.7",
     "h5io_browser==0.1.4",
     "h5py==3.12.1",
-    "numpy==1.26.4",
+    "numpy==2.2.1",
     "monty==2024.12.10",
     "pandas==2.2.3",
     "psutil==6.1.1",

From e2732b42424e35697c962dad234bd8c91c578355 Mon Sep 17 00:00:00 2001
From: "github-actions[bot]"
 <41898282+github-actions[bot]@users.noreply.github.com>
Date: Sat, 4 Jan 2025 08:04:25 +0000
Subject: [PATCH 02/30] [dependabot skip] Update environment

---
 .ci_support/environment-docs.yml | 2 +-
 .ci_support/environment-mini.yml | 2 +-
 .ci_support/environment.yml      | 2 +-
 binder/environment.yml           | 2 +-
 4 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/.ci_support/environment-docs.yml b/.ci_support/environment-docs.yml
index 43eb52baa..46d3687a4 100644
--- a/.ci_support/environment-docs.yml
+++ b/.ci_support/environment-docs.yml
@@ -13,7 +13,7 @@ dependencies:
 - h5py =3.12.1
 - jinja2 =3.1.4
 - monty =2024.12.10
-- numpy =1.26.4
+- numpy =2.2.1
 - pandas =2.2.3
 - pint =0.24.4
 - psutil =6.1.1
diff --git a/.ci_support/environment-mini.yml b/.ci_support/environment-mini.yml
index 7ef1de067..2baec1925 100644
--- a/.ci_support/environment-mini.yml
+++ b/.ci_support/environment-mini.yml
@@ -5,7 +5,7 @@ dependencies:
 - h5io_browser =0.1.4
 - h5py =3.12.1
 - monty =2024.12.10
-- numpy =1.26.4
+- numpy =2.2.1
 - pandas =2.2.3
 - psutil =6.1.1
 - pyfileindex =0.0.31
diff --git a/.ci_support/environment.yml b/.ci_support/environment.yml
index f6f113f60..b8079ad6e 100644
--- a/.ci_support/environment.yml
+++ b/.ci_support/environment.yml
@@ -11,7 +11,7 @@ dependencies:
 - h5py =3.12.1
 - jinja2 =3.1.4
 - monty =2024.12.10
-- numpy =1.26.4
+- numpy =2.2.1
 - pandas =2.2.3
 - pint =0.24.4
 - psutil =6.1.1
diff --git a/binder/environment.yml b/binder/environment.yml
index e7c69417c..0ed2c5b3e 100644
--- a/binder/environment.yml
+++ b/binder/environment.yml
@@ -10,7 +10,7 @@ dependencies:
 - h5py =3.12.1
 - jinja2 =3.1.4
 - monty =2024.12.10
-- numpy =1.26.4
+- numpy =2.2.1
 - pandas =2.2.3
 - pint =0.24.4
 - psutil =6.1.1

From faa3741f2d1f946fd05f031c5c0b96bc240d180b Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Mon, 6 Jan 2025 07:33:26 +0000
Subject: [PATCH 03/30] Bump jinja2 from 3.1.4 to 3.1.5

Bumps [jinja2](https://github.com/pallets/jinja) from 3.1.4 to 3.1.5.
- [Release notes](https://github.com/pallets/jinja/releases)
- [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst)
- [Commits](https://github.com/pallets/jinja/compare/3.1.4...3.1.5)

---
updated-dependencies:
- dependency-name: jinja2
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 7117b657d..0ba81e3d4 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -56,7 +56,7 @@ devel = [
     "gitpython==3.1.44",
 ]
 flux = [
-    "jinja2==3.1.4",
+    "jinja2==3.1.5",
 ]
 stats = [
     "pint==0.24.4",

From db95bddd0ad965907a60f969cd138ccf142c6bd1 Mon Sep 17 00:00:00 2001
From: "github-actions[bot]"
 <41898282+github-actions[bot]@users.noreply.github.com>
Date: Mon, 6 Jan 2025 07:37:46 +0000
Subject: [PATCH 04/30] [dependabot skip] Update environment

---
 .ci_support/environment-docs.yml | 2 +-
 .ci_support/environment.yml      | 2 +-
 binder/environment.yml           | 2 +-
 3 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/.ci_support/environment-docs.yml b/.ci_support/environment-docs.yml
index 3e8c287d7..0897e8a69 100644
--- a/.ci_support/environment-docs.yml
+++ b/.ci_support/environment-docs.yml
@@ -11,7 +11,7 @@ dependencies:
 - gitpython =3.1.44
 - h5io_browser =0.1.4
 - h5py =3.12.1
-- jinja2 =3.1.4
+- jinja2 =3.1.5
 - monty =2024.12.10
 - numpy =1.26.4
 - pandas =2.2.3
diff --git a/.ci_support/environment.yml b/.ci_support/environment.yml
index 8e71723a6..4e6ff57ef 100644
--- a/.ci_support/environment.yml
+++ b/.ci_support/environment.yml
@@ -9,7 +9,7 @@ dependencies:
 - gitpython =3.1.44
 - h5io_browser =0.1.4
 - h5py =3.12.1
-- jinja2 =3.1.4
+- jinja2 =3.1.5
 - monty =2024.12.10
 - numpy =1.26.4
 - pandas =2.2.3
diff --git a/binder/environment.yml b/binder/environment.yml
index 57b91ad77..601169485 100644
--- a/binder/environment.yml
+++ b/binder/environment.yml
@@ -8,7 +8,7 @@ dependencies:
 - gitpython =3.1.44
 - h5io_browser =0.1.4
 - h5py =3.12.1
-- jinja2 =3.1.4
+- jinja2 =3.1.5
 - monty =2024.12.10
 - numpy =1.26.4
 - pandas =2.2.3

From 8eed848311a91c8ce92883889c6c80bd1e1dd775 Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 6 Jan 2025 21:52:17 +0000
Subject: [PATCH 05/30] [pre-commit.ci] pre-commit autoupdate
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.8.4 → v0.8.6](https://github.com/astral-sh/ruff-pre-commit/compare/v0.8.4...v0.8.6)
---
 .pre-commit-config.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index fb4d093c6..3b10414e2 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,6 +1,6 @@
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.8.4
+    rev: v0.8.6
     hooks:
       - id: ruff
         name: ruff lint

From 23fc5f4fa37c27ec050791fc65649e5577e4b28b Mon Sep 17 00:00:00 2001
From: Jan Janssen <jan-janssen@users.noreply.github.com>
Date: Tue, 7 Jan 2025 15:15:41 +0100
Subject: [PATCH 06/30] Update pyproject.toml

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 045d45e9c..284f02ee5 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -25,7 +25,7 @@ classifiers = [
 dependencies = [
     "cloudpickle==3.1.0",
     "executorlib==0.0.7",
-    "h5io_browser==0.1.4",
+    "h5io_browser==0.1.5",
     "h5py==3.12.1",
     "numpy==2.2.1",
     "monty==2024.12.10",

From 8fef02315191e131ffdcbaebee53b77791c48331 Mon Sep 17 00:00:00 2001
From: Jan Janssen <jan-janssen@users.noreply.github.com>
Date: Tue, 7 Jan 2025 15:16:04 +0100
Subject: [PATCH 07/30] Update environment.yml

---
 binder/environment.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/binder/environment.yml b/binder/environment.yml
index 0ed2c5b3e..d769857af 100644
--- a/binder/environment.yml
+++ b/binder/environment.yml
@@ -6,7 +6,7 @@ dependencies:
 - conda_subprocess =0.0.5
 - cloudpickle =3.1.0
 - gitpython =3.1.44
-- h5io_browser =0.1.4
+- h5io_browser =0.1.5
 - h5py =3.12.1
 - jinja2 =3.1.4
 - monty =2024.12.10

From 6f0cd444eeca9ea6b53b863a642bdc23d166ee46 Mon Sep 17 00:00:00 2001
From: Jan Janssen <jan-janssen@users.noreply.github.com>
Date: Tue, 7 Jan 2025 15:17:35 +0100
Subject: [PATCH 08/30] Update environment.yml

---
 .ci_support/environment.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.ci_support/environment.yml b/.ci_support/environment.yml
index b8079ad6e..6d26671c0 100644
--- a/.ci_support/environment.yml
+++ b/.ci_support/environment.yml
@@ -7,7 +7,7 @@ dependencies:
 - conda_subprocess =0.0.5
 - cloudpickle =3.1.0
 - gitpython =3.1.44
-- h5io_browser =0.1.4
+- h5io_browser =0.1.5
 - h5py =3.12.1
 - jinja2 =3.1.4
 - monty =2024.12.10

From c83f8f72021dd90414431416f453e3f015ef6205 Mon Sep 17 00:00:00 2001
From: Jan Janssen <jan-janssen@users.noreply.github.com>
Date: Tue, 7 Jan 2025 15:18:15 +0100
Subject: [PATCH 09/30] Update environment-mini.yml

---
 .ci_support/environment-mini.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.ci_support/environment-mini.yml b/.ci_support/environment-mini.yml
index 2baec1925..be03d68d2 100644
--- a/.ci_support/environment-mini.yml
+++ b/.ci_support/environment-mini.yml
@@ -2,7 +2,7 @@ channels:
 - conda-forge
 dependencies:
 - cloudpickle =3.1.0
-- h5io_browser =0.1.4
+- h5io_browser =0.1.5
 - h5py =3.12.1
 - monty =2024.12.10
 - numpy =2.2.1

From 5bed20f5e04eda2e0162dabc122c8a7589d28746 Mon Sep 17 00:00:00 2001
From: Jan Janssen <jan-janssen@users.noreply.github.com>
Date: Tue, 7 Jan 2025 15:18:35 +0100
Subject: [PATCH 10/30] Update environment-docs.yml

---
 .ci_support/environment-docs.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.ci_support/environment-docs.yml b/.ci_support/environment-docs.yml
index 46d3687a4..b7823af81 100644
--- a/.ci_support/environment-docs.yml
+++ b/.ci_support/environment-docs.yml
@@ -9,7 +9,7 @@ dependencies:
 - conda_subprocess =0.0.5
 - cloudpickle =3.1.0
 - gitpython =3.1.44
-- h5io_browser =0.1.4
+- h5io_browser =0.1.5
 - h5py =3.12.1
 - jinja2 =3.1.4
 - monty =2024.12.10

From d655d63362d5c9b98a76ae51cf8b2108c4d8f940 Mon Sep 17 00:00:00 2001
From: Jan Janssen <jan-janssen@users.noreply.github.com>
Date: Tue, 7 Jan 2025 15:24:31 +0100
Subject: [PATCH 11/30] Update environment-docs.yml

---
 .ci_support/environment-docs.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.ci_support/environment-docs.yml b/.ci_support/environment-docs.yml
index b7823af81..0e5aaf8f8 100644
--- a/.ci_support/environment-docs.yml
+++ b/.ci_support/environment-docs.yml
@@ -17,7 +17,7 @@ dependencies:
 - pandas =2.2.3
 - pint =0.24.4
 - psutil =6.1.1
-- pyfileindex =0.0.31
+- pyfileindex =0.0.32
 - pyiron_dataclasses =0.0.1
 - pyiron_snippets =0.1.4
 - executorlib =0.0.7

From e408fbfdb2ffa189e456da761fab32e291a6f42b Mon Sep 17 00:00:00 2001
From: Jan Janssen <jan-janssen@users.noreply.github.com>
Date: Tue, 7 Jan 2025 15:27:43 +0100
Subject: [PATCH 12/30] Update environment.yml

---
 .ci_support/environment.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.ci_support/environment.yml b/.ci_support/environment.yml
index 6d26671c0..6ac72172d 100644
--- a/.ci_support/environment.yml
+++ b/.ci_support/environment.yml
@@ -15,7 +15,7 @@ dependencies:
 - pandas =2.2.3
 - pint =0.24.4
 - psutil =6.1.1
-- pyfileindex =0.0.31
+- pyfileindex =0.0.32
 - pyiron_dataclasses =0.0.1
 - pyiron_snippets =0.1.4
 - executorlib =0.0.7

From ba28a0fe89cd38a6500777466087e9e2a39bbdc9 Mon Sep 17 00:00:00 2001
From: Jan Janssen <jan-janssen@users.noreply.github.com>
Date: Tue, 7 Jan 2025 15:28:12 +0100
Subject: [PATCH 13/30] Update environment.yml

---
 binder/environment.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/binder/environment.yml b/binder/environment.yml
index d769857af..1294757b2 100644
--- a/binder/environment.yml
+++ b/binder/environment.yml
@@ -14,7 +14,7 @@ dependencies:
 - pandas =2.2.3
 - pint =0.24.4
 - psutil =6.1.1
-- pyfileindex =0.0.31
+- pyfileindex =0.0.32
 - pyiron_dataclasses =0.0.1
 - pyiron_snippets =0.1.4
 - executorlib =0.0.7

From b42f4a56566aeef25fe2965697bffa4c916552a8 Mon Sep 17 00:00:00 2001
From: Jan Janssen <jan-janssen@users.noreply.github.com>
Date: Tue, 7 Jan 2025 15:28:35 +0100
Subject: [PATCH 14/30] Update pyproject.toml

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 284f02ee5..6a7857303 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -31,7 +31,7 @@ dependencies = [
     "monty==2024.12.10",
     "pandas==2.2.3",
     "psutil==6.1.1",
-    "pyfileindex==0.0.31",
+    "pyfileindex==0.0.32",
     "pyiron_dataclasses==0.0.1",
     "pyiron_snippets==0.1.4",
     "pysqa==0.2.2",

From a193e31198bbe0742bb84b99b06777bc41cf6c1e Mon Sep 17 00:00:00 2001
From: Jan Janssen <jan-janssen@users.noreply.github.com>
Date: Tue, 7 Jan 2025 15:29:09 +0100
Subject: [PATCH 15/30] Update environment-mini.yml

---
 .ci_support/environment-mini.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.ci_support/environment-mini.yml b/.ci_support/environment-mini.yml
index be03d68d2..d8477f9cd 100644
--- a/.ci_support/environment-mini.yml
+++ b/.ci_support/environment-mini.yml
@@ -8,7 +8,7 @@ dependencies:
 - numpy =2.2.1
 - pandas =2.2.3
 - psutil =6.1.1
-- pyfileindex =0.0.31
+- pyfileindex =0.0.32
 - pyiron_dataclasses =0.0.1
 - pyiron_snippets =0.1.3
 - executorlib =0.0.7

From 25d9535869e8d4f0a19dddeae8743717b195239e Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Wed, 8 Jan 2025 04:16:35 +0000
Subject: [PATCH 16/30] Bump pyfileindex from 0.0.31 to 0.0.32

Bumps [pyfileindex](https://github.com/pyiron/pyfileindex) from 0.0.31 to 0.0.32.
- [Release notes](https://github.com/pyiron/pyfileindex/releases)
- [Commits](https://github.com/pyiron/pyfileindex/compare/pyfileindex-0.0.31...pyfileindex-0.0.32)

---
updated-dependencies:
- dependency-name: pyfileindex
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 0ba81e3d4..ddb83d50f 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -31,7 +31,7 @@ dependencies = [
     "monty==2024.12.10",
     "pandas==2.2.3",
     "psutil==6.1.1",
-    "pyfileindex==0.0.31",
+    "pyfileindex==0.0.32",
     "pyiron_dataclasses==0.0.1",
     "pyiron_snippets==0.1.4",
     "pysqa==0.2.3",

From 7ade024845c287851426d204396597905e82b1f8 Mon Sep 17 00:00:00 2001
From: "github-actions[bot]"
 <41898282+github-actions[bot]@users.noreply.github.com>
Date: Wed, 8 Jan 2025 04:18:15 +0000
Subject: [PATCH 17/30] [dependabot skip] Update environment

---
 .ci_support/environment-docs.yml | 2 +-
 .ci_support/environment-mini.yml | 2 +-
 .ci_support/environment.yml      | 2 +-
 binder/environment.yml           | 2 +-
 4 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/.ci_support/environment-docs.yml b/.ci_support/environment-docs.yml
index 0897e8a69..64678c8b4 100644
--- a/.ci_support/environment-docs.yml
+++ b/.ci_support/environment-docs.yml
@@ -17,7 +17,7 @@ dependencies:
 - pandas =2.2.3
 - pint =0.24.4
 - psutil =6.1.1
-- pyfileindex =0.0.31
+- pyfileindex =0.0.32
 - pyiron_dataclasses =0.0.1
 - pyiron_snippets =0.1.4
 - executorlib =0.0.7
diff --git a/.ci_support/environment-mini.yml b/.ci_support/environment-mini.yml
index 2d8c86c3d..56a941b44 100644
--- a/.ci_support/environment-mini.yml
+++ b/.ci_support/environment-mini.yml
@@ -8,7 +8,7 @@ dependencies:
 - numpy =1.26.4
 - pandas =2.2.3
 - psutil =6.1.1
-- pyfileindex =0.0.31
+- pyfileindex =0.0.32
 - pyiron_dataclasses =0.0.1
 - pyiron_snippets =0.1.3
 - executorlib =0.0.7
diff --git a/.ci_support/environment.yml b/.ci_support/environment.yml
index 4e6ff57ef..5f6b15176 100644
--- a/.ci_support/environment.yml
+++ b/.ci_support/environment.yml
@@ -15,7 +15,7 @@ dependencies:
 - pandas =2.2.3
 - pint =0.24.4
 - psutil =6.1.1
-- pyfileindex =0.0.31
+- pyfileindex =0.0.32
 - pyiron_dataclasses =0.0.1
 - pyiron_snippets =0.1.4
 - executorlib =0.0.7
diff --git a/binder/environment.yml b/binder/environment.yml
index 601169485..8968d0f30 100644
--- a/binder/environment.yml
+++ b/binder/environment.yml
@@ -14,7 +14,7 @@ dependencies:
 - pandas =2.2.3
 - pint =0.24.4
 - psutil =6.1.1
-- pyfileindex =0.0.31
+- pyfileindex =0.0.32
 - pyiron_dataclasses =0.0.1
 - pyiron_snippets =0.1.4
 - executorlib =0.0.7

From bf443e0eac2501e3d5c0abb0a02df96f8968c2dd Mon Sep 17 00:00:00 2001
From: Jan Janssen <jan-janssen@users.noreply.github.com>
Date: Wed, 8 Jan 2025 08:50:58 +0100
Subject: [PATCH 18/30] Update environment.yml

---
 .ci_support/environment.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.ci_support/environment.yml b/.ci_support/environment.yml
index c839cbca6..f8fc82bf2 100644
--- a/.ci_support/environment.yml
+++ b/.ci_support/environment.yml
@@ -3,7 +3,7 @@ channels:
 dependencies:
 - coverage
 - codacy-coverage
-- conda =24.5.0
+- conda =24.9.1
 - conda_subprocess =0.0.5
 - cloudpickle =3.1.0
 - gitpython =3.1.44

From c501f30228ca40421fbb7a8876246185d56ac2e6 Mon Sep 17 00:00:00 2001
From: Jan Janssen <jan-janssen@users.noreply.github.com>
Date: Wed, 8 Jan 2025 08:51:24 +0100
Subject: [PATCH 19/30] Update environment-docs.yml

---
 .ci_support/environment-docs.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.ci_support/environment-docs.yml b/.ci_support/environment-docs.yml
index f30cfb41c..d17cf3f8a 100644
--- a/.ci_support/environment-docs.yml
+++ b/.ci_support/environment-docs.yml
@@ -5,7 +5,7 @@ dependencies:
 - sphinx
 - sphinx_rtd_theme
 - myst-parser
-- conda =24.5.0
+- conda =24.9.1
 - conda_subprocess =0.0.5
 - cloudpickle =3.1.0
 - gitpython =3.1.44

From e04aad17ace945593579ac3e9aa6a004adc0dfb8 Mon Sep 17 00:00:00 2001
From: Jan Janssen <jan-janssen@users.noreply.github.com>
Date: Wed, 8 Jan 2025 08:51:53 +0100
Subject: [PATCH 20/30] Update pyproject.toml

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index a0990d02e..637c8dd2d 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -49,7 +49,7 @@ Repository = "https://github.com/pyiron/pyiron_base"
 
 [project.optional-dependencies]
 conda = [
-    "conda==24.5.0",
+    "conda==24.9.1",
     "conda_subprocess==0.0.5",
 ]
 devel = [

From c22cc7e706a41f3770898f4758d507bf4ee7ea3e Mon Sep 17 00:00:00 2001
From: Jan Janssen <jan-janssen@users.noreply.github.com>
Date: Wed, 8 Jan 2025 08:52:14 +0100
Subject: [PATCH 21/30] Update environment.yml

---
 binder/environment.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/binder/environment.yml b/binder/environment.yml
index 3ca410867..5ee24ffda 100644
--- a/binder/environment.yml
+++ b/binder/environment.yml
@@ -2,7 +2,7 @@ channels:
 - conda-forge
 dependencies:
 - python
-- conda =24.5.0
+- conda =24.9.1
 - conda_subprocess =0.0.5
 - cloudpickle =3.1.0
 - gitpython =3.1.44

From b55a8295456f98692b6ffc1191f5cfa8613b143d Mon Sep 17 00:00:00 2001
From: Jan Janssen <jan-janssen@users.noreply.github.com>
Date: Wed, 8 Jan 2025 08:53:16 +0100
Subject: [PATCH 22/30] Update environment-docs.yml

---
 .ci_support/environment-docs.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.ci_support/environment-docs.yml b/.ci_support/environment-docs.yml
index d17cf3f8a..488783fd4 100644
--- a/.ci_support/environment-docs.yml
+++ b/.ci_support/environment-docs.yml
@@ -5,7 +5,7 @@ dependencies:
 - sphinx
 - sphinx_rtd_theme
 - myst-parser
-- conda =24.9.1
+- conda =24.7.1
 - conda_subprocess =0.0.5
 - cloudpickle =3.1.0
 - gitpython =3.1.44

From bc5bc9f349bfed041a83c7ec30d748b8c69ba288 Mon Sep 17 00:00:00 2001
From: Jan Janssen <jan-janssen@users.noreply.github.com>
Date: Wed, 8 Jan 2025 08:53:29 +0100
Subject: [PATCH 23/30] Update environment.yml

---
 .ci_support/environment.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.ci_support/environment.yml b/.ci_support/environment.yml
index f8fc82bf2..681c7ed7e 100644
--- a/.ci_support/environment.yml
+++ b/.ci_support/environment.yml
@@ -3,7 +3,7 @@ channels:
 dependencies:
 - coverage
 - codacy-coverage
-- conda =24.9.1
+- conda =24.7.1
 - conda_subprocess =0.0.5
 - cloudpickle =3.1.0
 - gitpython =3.1.44

From 64639d3d08f7cb4c72948042f9098b3fda4c3b26 Mon Sep 17 00:00:00 2001
From: Jan Janssen <jan-janssen@users.noreply.github.com>
Date: Wed, 8 Jan 2025 08:53:42 +0100
Subject: [PATCH 24/30] Update environment.yml

---
 binder/environment.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/binder/environment.yml b/binder/environment.yml
index 5ee24ffda..ec0485615 100644
--- a/binder/environment.yml
+++ b/binder/environment.yml
@@ -2,7 +2,7 @@ channels:
 - conda-forge
 dependencies:
 - python
-- conda =24.9.1
+- conda =24.7.1
 - conda_subprocess =0.0.5
 - cloudpickle =3.1.0
 - gitpython =3.1.44

From df1b6019899301a9a1bdcfbfee7924e702aaefd3 Mon Sep 17 00:00:00 2001
From: Jan Janssen <jan-janssen@users.noreply.github.com>
Date: Wed, 8 Jan 2025 08:54:03 +0100
Subject: [PATCH 25/30] Update pyproject.toml

---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 637c8dd2d..40336f8c2 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -49,7 +49,7 @@ Repository = "https://github.com/pyiron/pyiron_base"
 
 [project.optional-dependencies]
 conda = [
-    "conda==24.9.1",
+    "conda==24.7.1",
     "conda_subprocess==0.0.5",
 ]
 devel = [

From 75b0512b061000571aa298260c3f972cd429e587 Mon Sep 17 00:00:00 2001
From: Jan Janssen <jan-janssen@users.noreply.github.com>
Date: Wed, 8 Jan 2025 09:28:29 +0100
Subject: [PATCH 26/30] Remove Prefix from CI

---
 .github/workflows/unittests.yml | 2 --
 1 file changed, 2 deletions(-)

diff --git a/.github/workflows/unittests.yml b/.github/workflows/unittests.yml
index 5bcc6fe3e..5a469bc40 100644
--- a/.github/workflows/unittests.yml
+++ b/.github/workflows/unittests.yml
@@ -16,12 +16,10 @@ jobs:
         - operating-system: macos-latest
           python-version: '3.12'
           label: osx-64-py-3-12
-          prefix: /Users/runner/miniconda3/envs/my-env
 
         - operating-system: windows-latest
           python-version: '3.12'
           label: win-64-py-3-12
-          prefix: C:\Miniconda3\envs\my-env
 
         - operating-system: ubuntu-latest
           python-version: '3.12'

From c39198cede3739698610de64c466e1fa5c237eff Mon Sep 17 00:00:00 2001
From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com>
Date: Fri, 10 Jan 2025 04:19:09 +0000
Subject: [PATCH 27/30] Bump sqlalchemy from 2.0.36 to 2.0.37

Bumps [sqlalchemy](https://github.com/sqlalchemy/sqlalchemy) from 2.0.36 to 2.0.37.
- [Release notes](https://github.com/sqlalchemy/sqlalchemy/releases)
- [Changelog](https://github.com/sqlalchemy/sqlalchemy/blob/main/CHANGES.rst)
- [Commits](https://github.com/sqlalchemy/sqlalchemy/commits)

---
updated-dependencies:
- dependency-name: sqlalchemy
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
---
 pyproject.toml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pyproject.toml b/pyproject.toml
index 40336f8c2..cb9c40edb 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -35,7 +35,7 @@ dependencies = [
     "pyiron_dataclasses==0.0.1",
     "pyiron_snippets==0.1.4",
     "pysqa==0.2.3",
-    "sqlalchemy==2.0.36",
+    "sqlalchemy==2.0.37",
     "tables==3.10.1",
     "tqdm==4.67.1",
     "traitlets==5.14.3",

From 609a5a4d7f4b2cd51be04b16e3abcf5761c360f0 Mon Sep 17 00:00:00 2001
From: "github-actions[bot]"
 <41898282+github-actions[bot]@users.noreply.github.com>
Date: Fri, 10 Jan 2025 04:19:28 +0000
Subject: [PATCH 28/30] [dependabot skip] Update environment

---
 .ci_support/environment-docs.yml | 2 +-
 .ci_support/environment-mini.yml | 2 +-
 .ci_support/environment.yml      | 2 +-
 binder/environment.yml           | 2 +-
 4 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/.ci_support/environment-docs.yml b/.ci_support/environment-docs.yml
index 488783fd4..eca2abc88 100644
--- a/.ci_support/environment-docs.yml
+++ b/.ci_support/environment-docs.yml
@@ -23,7 +23,7 @@ dependencies:
 - executorlib =0.0.7
 - pysqa =0.2.3
 - pytables =3.10.1
-- sqlalchemy =2.0.36
+- sqlalchemy =2.0.37
 - tqdm =4.67.1
 - traitlets =5.14.3
 - jupyter-book =1.0.0
diff --git a/.ci_support/environment-mini.yml b/.ci_support/environment-mini.yml
index 3a265d99d..b0268bf9b 100644
--- a/.ci_support/environment-mini.yml
+++ b/.ci_support/environment-mini.yml
@@ -14,7 +14,7 @@ dependencies:
 - executorlib =0.0.7
 - pysqa =0.2.3
 - pytables =3.10.1
-- sqlalchemy =2.0.36
+- sqlalchemy =2.0.37
 - tqdm =4.67.1
 - traitlets =5.14.3
 - setuptools
diff --git a/.ci_support/environment.yml b/.ci_support/environment.yml
index 681c7ed7e..a66197082 100644
--- a/.ci_support/environment.yml
+++ b/.ci_support/environment.yml
@@ -21,6 +21,6 @@ dependencies:
 - executorlib =0.0.7
 - pysqa =0.2.3
 - pytables =3.10.1
-- sqlalchemy =2.0.36
+- sqlalchemy =2.0.37
 - tqdm =4.67.1
 - traitlets =5.14.3
diff --git a/binder/environment.yml b/binder/environment.yml
index ec0485615..aeef5eb4b 100644
--- a/binder/environment.yml
+++ b/binder/environment.yml
@@ -20,6 +20,6 @@ dependencies:
 - executorlib =0.0.7
 - pysqa =0.2.3
 - pytables =3.10.1
-- sqlalchemy =2.0.36
+- sqlalchemy =2.0.37
 - tqdm =4.67.1
 - traitlets =5.14.3

From 395e8f5fa387b5cad1c8707e793ae1e2df87af4a Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 13 Jan 2025 21:12:08 +0000
Subject: [PATCH 29/30] [pre-commit.ci] pre-commit autoupdate
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

updates:
- [github.com/astral-sh/ruff-pre-commit: v0.8.6 → v0.9.1](https://github.com/astral-sh/ruff-pre-commit/compare/v0.8.6...v0.9.1)
---
 .pre-commit-config.yaml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 3b10414e2..6828f747b 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -1,6 +1,6 @@
 repos:
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.8.6
+    rev: v0.9.1
     hooks:
       - id: ruff
         name: ruff lint

From d067c6ffb9a82a2076baac9b85f9dc06718355ae Mon Sep 17 00:00:00 2001
From: "pre-commit-ci[bot]"
 <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Date: Mon, 13 Jan 2025 21:12:28 +0000
Subject: [PATCH 30/30] [pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci
---
 pyiron_base/cli/control.py                  | 2 +-
 pyiron_base/jobs/master/list.py             | 2 +-
 pyiron_base/jobs/master/parallel.py         | 2 +-
 pyiron_base/storage/flattenedstorage.py     | 2 +-
 tests/unit/database/test_database_access.py | 2 +-
 tests/unit/job/test_jobtypechoice.py        | 9 ++++-----
 tests/unit/project/test_jobloader.py        | 3 +--
 7 files changed, 10 insertions(+), 12 deletions(-)

diff --git a/pyiron_base/cli/control.py b/pyiron_base/cli/control.py
index cafc57c65..4b3ba5416 100644
--- a/pyiron_base/cli/control.py
+++ b/pyiron_base/cli/control.py
@@ -54,7 +54,7 @@ def main() -> None:
             mod.register(sub_parser)
         except AttributeError:
             warnings.warn(
-                "module '{}' does not define main or register " "function, ignoring"
+                "module '{}' does not define main or register function, ignoring"
             )
 
     args = parser.parse_args()
diff --git a/pyiron_base/jobs/master/list.py b/pyiron_base/jobs/master/list.py
index 13d233c50..e2c255f3a 100644
--- a/pyiron_base/jobs/master/list.py
+++ b/pyiron_base/jobs/master/list.py
@@ -218,7 +218,7 @@ def run_if_refresh(self):
         Internal helper function the run if refresh function is called when the job status is 'refresh'. If the job was
         suspended previously, the job is going to be started again, to be continued.
         """
-        log_str = "{}, status: {}, finished: {} parallel master " "refresh".format(
+        log_str = "{}, status: {}, finished: {} parallel master refresh".format(
             self.job_info_str, self.status, self.is_finished()
         )
         self._logger.info(log_str)
diff --git a/pyiron_base/jobs/master/parallel.py b/pyiron_base/jobs/master/parallel.py
index c68520851..f22635a95 100644
--- a/pyiron_base/jobs/master/parallel.py
+++ b/pyiron_base/jobs/master/parallel.py
@@ -308,7 +308,7 @@ def run_if_refresh(self):
         Internal helper function the run if refresh function is called when the job status is 'refresh'. If the job was
         suspended previously, the job is going to be started again, to be continued.
         """
-        log_str = "{}, status: {}, finished: {} parallel master " "refresh".format(
+        log_str = "{}, status: {}, finished: {} parallel master refresh".format(
             self.job_info_str, self.status, self.is_finished()
         )
         self._logger.info(log_str)
diff --git a/pyiron_base/storage/flattenedstorage.py b/pyiron_base/storage/flattenedstorage.py
index f6a0dfe43..693686741 100644
--- a/pyiron_base/storage/flattenedstorage.py
+++ b/pyiron_base/storage/flattenedstorage.py
@@ -1040,7 +1040,7 @@ def read_array(name, hdf):
                     # itemsize of original a is four bytes per character, so divide by four to get
                     # length of the orignal stored unicode string; np.dtype('U1').itemsize is just a
                     # platform agnostic way of knowing how wide a unicode charater is for numpy
-                    dtype=f"U{a.dtype.itemsize//np.dtype('U1').itemsize}",
+                    dtype=f"U{a.dtype.itemsize // np.dtype('U1').itemsize}",
                 )
             return a
 
diff --git a/tests/unit/database/test_database_access.py b/tests/unit/database/test_database_access.py
index b08c94284..b4bbfd3a2 100644
--- a/tests/unit/database/test_database_access.py
+++ b/tests/unit/database/test_database_access.py
@@ -107,7 +107,7 @@ def test_get_items_sql(self):
         # be sure that get_items_sql returns right result with right statement
         result = self.database.get_items_sql(
             where_condition="",
-            sql_statement="select * from simulation " "where id=%s" % key,
+            sql_statement="select * from simulation where id=%s" % key,
         )[-1]
         self.assertTrue(par_dict.items() <= result.items())
 
diff --git a/tests/unit/job/test_jobtypechoice.py b/tests/unit/job/test_jobtypechoice.py
index a358c155c..8da717725 100644
--- a/tests/unit/job/test_jobtypechoice.py
+++ b/tests/unit/job/test_jobtypechoice.py
@@ -33,7 +33,7 @@ def test_attr(self):
                 getattr(self.jobtypechoice, k)
         except AttributeError:
             self.fail(
-                "job class {} in JOB_CLASS_DICT, but not on " "JobTypeChoice".format(k)
+                "job class {} in JOB_CLASS_DICT, but not on JobTypeChoice".format(k)
             )
 
     def test_extend_job_class_dict(self):
@@ -44,14 +44,13 @@ def test_extend_job_class_dict(self):
         JOB_CLASS_DICT["TestClass"] = "my.own.test.module"
         self.assertTrue(
             "TestClass" in dir(self.jobtypechoice),
-            "new job class added to JOB_CLASS_DICT, but not " "returned in dir()",
+            "new job class added to JOB_CLASS_DICT, but not returned in dir()",
         )
         try:
             getattr(self.jobtypechoice, "TestClass")
         except AttributeError:
             self.fail(
-                "new job class added to JOB_CLASS_DICT, but not defined "
-                "JobTypeChoice"
+                "new job class added to JOB_CLASS_DICT, but not defined JobTypeChoice"
             )
 
 
@@ -81,5 +80,5 @@ def test_attr(self):
                 getattr(self.job_factory, k)
         except AttributeError:
             self.fail(
-                "job class {} in JOB_CLASS_DICT, but not on " "JobTypeChoice".format(k)
+                "job class {} in JOB_CLASS_DICT, but not on JobTypeChoice".format(k)
             )
diff --git a/tests/unit/project/test_jobloader.py b/tests/unit/project/test_jobloader.py
index 7b3573ffd..59b13c139 100644
--- a/tests/unit/project/test_jobloader.py
+++ b/tests/unit/project/test_jobloader.py
@@ -22,8 +22,7 @@ def test_load(self):
         self.assertEqual(
             len(self.project.job_table()),
             len(self.project.load.__dir__()),
-            msg="Tab completion (`__dir__`) should see both jobs at this project "
-            "level",
+            msg="Tab completion (`__dir__`) should see both jobs at this project level",
             # Note: When job names are duplicated at different sub-project levels, the
             # job name occurs in the __dir__ multiple times, even though it will only
             # show up in the tab-completion menu once (where it accesses the top-most