diff --git a/.github/workflows/dependabot-auto-merge.yml b/.github/workflows/dependabot-auto-merge.yml
index 106d3699..ac3dafac 100644
--- a/.github/workflows/dependabot-auto-merge.yml
+++ b/.github/workflows/dependabot-auto-merge.yml
@@ -12,13 +12,13 @@ permissions:
 jobs:
   auto-merge:
     runs-on: ubuntu-latest
-    if: ${{ github.actor == 'dependabot[bot]' }}
+    if: ${{ github.event.pull_request.user.login == 'dependabot[bot]' || github.event.pull_request.user.login == 'pre-commit-ci[bot]' }}
     steps:
+      - name: Auto-approve
+        uses: hmarr/auto-approve-action@v4
+
       - name: Enable auto-merge
         run: gh pr merge --auto --squash "$PR_URL"
         env:
           PR_URL: ${{github.event.pull_request.html_url}}
           GITHUB_TOKEN: ${{secrets.GITHUB_TOKEN}}
-
-      - name: Auto-approve
-        uses: hmarr/auto-approve-action@v4
diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
index 54713bd8..2aa06b47 100644
--- a/.pre-commit-config.yaml
+++ b/.pre-commit-config.yaml
@@ -34,7 +34,7 @@ repos:
         args: [-d, '{extends: default, rules: {line-length: disable, document-start: disable, truthy: {level: error}, braces: {max-spaces-inside: 1}}}']
 
   - repo: https://github.com/asottile/pyupgrade
-    rev: v3.17.0
+    rev: v3.19.1
     hooks:
       - id: pyupgrade
         name: Upgrade Python syntax
@@ -54,7 +54,7 @@ repos:
         ]
 
   - repo: https://github.com/google/yapf
-    rev: v0.40.2
+    rev: v0.43.0
     hooks:
       - id: yapf
         name: Format code
@@ -74,14 +74,14 @@ repos:
         additional_dependencies: [Flake8-pyproject]
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.6.9
+    rev: v0.8.6
     hooks:
       - id: ruff
         name: Ruff formatting
         args: [--fix, --exit-non-zero-on-fix]
 
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.11.2
+    rev: v1.14.1
     hooks:
       - id: mypy
         name: Check types
@@ -89,7 +89,7 @@ repos:
         exclude: "^test/|^examples/|^benchmark/"
 
   - repo: https://github.com/executablebooks/mdformat
-    rev: 0.7.17
+    rev: 0.7.21
     hooks:
       - id: mdformat
         name: Format Markdown
diff --git a/CHANGELOG.md b/CHANGELOG.md
index c249fe29..3d44013c 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -3,7 +3,7 @@
 All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/).
 
-## \[Unreleased\]
+## [Unreleased]
 
 ### Added
 
@@ -31,7 +31,7 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/).
 - Removed CUDA synchronizations from `nn.LinearEmbeddingEncoder` ([#432](https://github.com/pyg-team/pytorch-frame/pull/432))
 - Removed CUDA synchronizations from N/A imputation logic in `nn.StypeEncoder` ([#433](https://github.com/pyg-team/pytorch-frame/pull/433), [#434](https://github.com/pyg-team/pytorch-frame/pull/434))
 
-## \[0.2.3\] - 2024-07-08
+## [0.2.3] - 2024-07-08
 
 ### Added
 
@@ -43,7 +43,7 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/).
 
 - Updated `ExcelFormer` implementation and related scripts ([#391](https://github.com/pyg-team/pytorch-frame/pull/391))
 
-## \[0.2.2\] - 2024-03-04
+## [0.2.2] - 2024-03-04
 
 ### Added
 
@@ -69,7 +69,7 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/).
 - Fixed the split of `DataFrameTextBenchmark` ([#358](https://github.com/pyg-team/pytorch-frame/pull/358))
 - Fixed empty `MultiNestedTensor` col indexing ([#355](https://github.com/pyg-team/pytorch-frame/pull/355))
 
-## \[0.2.1\] - 2024-01-16
+## [0.2.1] - 2024-01-16
 
 ### Added
 
@@ -91,7 +91,7 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/).
 - Fixed `TimestampEncoder` not applying `CyclicEncoder` to cyclic features ([#311](https://github.com/pyg-team/pytorch-frame/pull/311))
 - Fixed NaN masking in `multicateogrical` stype ([#307](https://github.com/pyg-team/pytorch-frame/pull/307))
 
-## \[0.2.0\] - 2023-12-15
+## [0.2.0] - 2023-12-15
 
 ### Added
 
@@ -143,7 +143,7 @@ The format is based on [Keep a Changelog](http://keepachangelog.com/en/1.0.0/).
 
 - No manual passing of `in_channels` to `LinearEmbeddingEncoder` for `stype.text_embedded` ([#222](https://github.com/pyg-team/pytorch-frame/pull/222))
 
-## \[0.1.0\] - 2023-10-23
+## [0.1.0] - 2023-10-23
 
 ### Added