latest-config-hpc-phanpy

# Run `./configure` to configure the unipept backend makefile.
#
# Editting this file does not configure the unipept backend run, it will
# only change the suggested configuration when you run `./configure`.
CONFIG_KMER_LENGTH="9"
CONFIG_TABDIR="/data/gent/vo/000/gvo00038/vsc41079/data/tables"
CONFIG_INTDIR="/data/gent/vo/000/gvo00038/vsc41079/data/intermediate"
CONFIG_TAXDIR="/data/gent/vo/000/gvo00038/vsc41079/data/sources"
CONFIG_SRCDIR="/data/gent/vo/000/gvo00038/vsc41079/data/sources"
CONFIG_JAVA_MEM="8g"
CONFIG_ENTREZ_BATCH_SIZE="1000"
CONFIG_CMD_SORT="sort --parallel=24"
CONFIG_CMD_GZIP="pigz -p24"
CONFIG_CMD_ZCAT="zcat"
CONFIG_CMD_UNZIP="unzip -DD"
CONFIG_CMD_SED="sed"
CONFIG_CMD_AWK="awk"
CONFIG_CMD_MKTEMP="mktemp"
CONFIG_CMD_JOIN="join"
CONFIG_SOURCES=(
    'swissprot' 'http://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_sprot.xml.gz'
    'trembl' 'http://ftp.ebi.ac.uk/pub/databases/uniprot/knowledgebase/uniprot_trembl.xml.gz'
)