Installation problems

[nomascus]

Hi, I have been having some trouble getting ORA to run. I installed it on my cluster account using the cpan instructions, which put it into a local perl library (I don't have sudo authority). I have loaded the cluster's Bioperl, HMMER, and FASTA modules, which seem to be accessible. However whenever I run ORA with either the dog chromosome in the test file or my own fastas, it tells me that no hit is found for any gene. The input files run fine on a colleague's cluster, so I gather it must be something with the installation. Do you know what could be causing this error?